Strain Fitness in Pseudomonas simiae WCS417 around PS417_16135

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16130 and PS417_16135 are separated by 145 nucleotidesPS417_16135 and PS417_16140 are separated by 155 nucleotidesPS417_16140 and PS417_16145 overlap by 7 nucleotides PS417_16130: PS417_16130 - quercetin 2,3-dioxygenase, at 3,538,007 to 3,538,729 _16130 PS417_16135: PS417_16135 - hypothetical protein, at 3,538,875 to 3,539,261 _16135 PS417_16140: PS417_16140 - ABC transporter, at 3,539,417 to 3,540,205 _16140 PS417_16145: PS417_16145 - sulfonate ABC transporter permease, at 3,540,199 to 3,541,188 _16145 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3538.205 kb on + strand, within PS417_16130at 3538.205 kb on + strand, within PS417_16130at 3538.205 kb on + strand, within PS417_16130at 3538.206 kb on - strand, within PS417_16130at 3538.565 kb on + strand, within PS417_16130at 3538.565 kb on + strand, within PS417_16130at 3538.565 kb on + strand, within PS417_16130at 3538.565 kb on + strand, within PS417_16130at 3538.566 kb on - strand, within PS417_16130at 3538.566 kb on - strand, within PS417_16130at 3538.852 kb on + strandat 3539.061 kb on - strand, within PS417_16135at 3539.325 kb on - strandat 3539.391 kb on + strandat 3539.391 kb on + strandat 3539.391 kb on + strandat 3539.392 kb on - strandat 3539.399 kb on - strandat 3539.475 kb on + strandat 3539.663 kb on - strand, within PS417_16140at 3540.153 kb on - strandat 3540.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,538,205 + PS417_16130 0.27 +0.5
3,538,205 + PS417_16130 0.27 -2.5
3,538,205 + PS417_16130 0.27 -0.4
3,538,206 - PS417_16130 0.28 -0.5
3,538,565 + PS417_16130 0.77 -0.7
3,538,565 + PS417_16130 0.77 -2.5
3,538,565 + PS417_16130 0.77 +0.1
3,538,565 + PS417_16130 0.77 -1.4
3,538,566 - PS417_16130 0.77 -0.5
3,538,566 - PS417_16130 0.77 +0.0
3,538,852 + -1.3
3,539,061 - PS417_16135 0.48 +0.2
3,539,325 - +0.2
3,539,391 + -0.8
3,539,391 + -1.0
3,539,391 + +0.4
3,539,392 - -0.3
3,539,399 - -0.2
3,539,475 + +0.5
3,539,663 - PS417_16140 0.31 +0.5
3,540,153 - -4.2
3,540,182 + +0.0

Or see this region's nucleotide sequence