Strain Fitness in Pseudomonas simiae WCS417 around PS417_15635

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15625 and PS417_15630 are separated by 121 nucleotidesPS417_15630 and PS417_15635 overlap by 36 nucleotidesPS417_15635 and PS417_15640 overlap by 4 nucleotidesPS417_15640 and PS417_15645 are separated by 2 nucleotidesPS417_15645 and PS417_15650 are separated by 199 nucleotides PS417_15625: PS417_15625 - lactate dehydrogenase, at 3,428,645 to 3,429,805 _15625 PS417_15630: PS417_15630 - DeoR faimly transcriptional regulator, at 3,429,927 to 3,430,712 _15630 PS417_15635: PS417_15635 - hypothetical protein, at 3,430,677 to 3,431,414 _15635 PS417_15640: PS417_15640 - DNA methylase, at 3,431,411 to 3,431,842 _15640 PS417_15645: PS417_15645 - hypothetical protein, at 3,431,845 to 3,432,057 _15645 PS417_15650: PS417_15650 - glutamine amidotransferase, at 3,432,257 to 3,432,817 _15650 Position (kb) 3430 3431 3432Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3429.739 kb on - strandat 3429.739 kb on - strandat 3429.776 kb on + strandat 3429.840 kb on + strandat 3430.105 kb on + strand, within PS417_15630at 3430.172 kb on + strand, within PS417_15630at 3430.234 kb on + strand, within PS417_15630at 3430.354 kb on + strand, within PS417_15630at 3430.354 kb on + strand, within PS417_15630at 3430.354 kb on + strand, within PS417_15630at 3430.355 kb on - strand, within PS417_15630at 3430.400 kb on + strand, within PS417_15630at 3430.453 kb on + strand, within PS417_15630at 3430.507 kb on + strand, within PS417_15630at 3430.668 kb on + strandat 3430.678 kb on + strandat 3430.769 kb on + strand, within PS417_15635at 3430.776 kb on - strand, within PS417_15635at 3430.847 kb on - strand, within PS417_15635at 3431.022 kb on - strand, within PS417_15635at 3431.089 kb on - strand, within PS417_15635at 3431.254 kb on + strand, within PS417_15635at 3431.254 kb on + strand, within PS417_15635at 3431.255 kb on - strand, within PS417_15635at 3431.613 kb on + strand, within PS417_15640at 3431.613 kb on + strand, within PS417_15640at 3431.614 kb on - strand, within PS417_15640at 3432.128 kb on + strandat 3432.129 kb on - strandat 3432.129 kb on - strandat 3432.272 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,429,739 - -0.5
3,429,739 - +0.7
3,429,776 + +0.7
3,429,840 + +0.1
3,430,105 + PS417_15630 0.23 -0.0
3,430,172 + PS417_15630 0.31 -0.3
3,430,234 + PS417_15630 0.39 +0.8
3,430,354 + PS417_15630 0.54 -0.6
3,430,354 + PS417_15630 0.54 +0.2
3,430,354 + PS417_15630 0.54 +0.4
3,430,355 - PS417_15630 0.54 -1.3
3,430,400 + PS417_15630 0.60 +3.3
3,430,453 + PS417_15630 0.67 -1.0
3,430,507 + PS417_15630 0.74 +0.2
3,430,668 + -2.2
3,430,678 + +0.7
3,430,769 + PS417_15635 0.12 -0.2
3,430,776 - PS417_15635 0.13 -1.7
3,430,847 - PS417_15635 0.23 -3.5
3,431,022 - PS417_15635 0.47 -2.7
3,431,089 - PS417_15635 0.56 -1.1
3,431,254 + PS417_15635 0.78 -0.1
3,431,254 + PS417_15635 0.78 +0.6
3,431,255 - PS417_15635 0.78 -0.1
3,431,613 + PS417_15640 0.47 +0.7
3,431,613 + PS417_15640 0.47 -0.7
3,431,614 - PS417_15640 0.47 +0.2
3,432,128 + +0.6
3,432,129 - -0.7
3,432,129 - +0.2
3,432,272 - +0.3

Or see this region's nucleotide sequence