Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15625 and PS417_15630 are separated by 121 nucleotides PS417_15630 and PS417_15635 overlap by 36 nucleotides PS417_15635 and PS417_15640 overlap by 4 nucleotides PS417_15640 and PS417_15645 are separated by 2 nucleotides PS417_15645 and PS417_15650 are separated by 199 nucleotides
PS417_15625: PS417_15625 - lactate dehydrogenase, at 3,428,645 to 3,429,805
_15625
PS417_15630: PS417_15630 - DeoR faimly transcriptional regulator, at 3,429,927 to 3,430,712
_15630
PS417_15635: PS417_15635 - hypothetical protein, at 3,430,677 to 3,431,414
_15635
PS417_15640: PS417_15640 - DNA methylase, at 3,431,411 to 3,431,842
_15640
PS417_15645: PS417_15645 - hypothetical protein, at 3,431,845 to 3,432,057
_15645
PS417_15650: PS417_15650 - glutamine amidotransferase, at 3,432,257 to 3,432,817
_15650
Position (kb)
3430
3431
3432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3429.739 kb on - strand at 3429.739 kb on - strand at 3429.776 kb on + strand at 3429.840 kb on + strand at 3430.105 kb on + strand, within PS417_15630 at 3430.172 kb on + strand, within PS417_15630 at 3430.234 kb on + strand, within PS417_15630 at 3430.354 kb on + strand, within PS417_15630 at 3430.354 kb on + strand, within PS417_15630 at 3430.354 kb on + strand, within PS417_15630 at 3430.355 kb on - strand, within PS417_15630 at 3430.400 kb on + strand, within PS417_15630 at 3430.453 kb on + strand, within PS417_15630 at 3430.507 kb on + strand, within PS417_15630 at 3430.668 kb on + strand at 3430.678 kb on + strand at 3430.769 kb on + strand, within PS417_15635 at 3430.776 kb on - strand, within PS417_15635 at 3430.847 kb on - strand, within PS417_15635 at 3431.022 kb on - strand, within PS417_15635 at 3431.089 kb on - strand, within PS417_15635 at 3431.254 kb on + strand, within PS417_15635 at 3431.254 kb on + strand, within PS417_15635 at 3431.255 kb on - strand, within PS417_15635 at 3431.613 kb on + strand, within PS417_15640 at 3431.613 kb on + strand, within PS417_15640 at 3431.614 kb on - strand, within PS417_15640 at 3432.128 kb on + strand at 3432.129 kb on - strand at 3432.129 kb on - strand at 3432.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,429,739 - -0.5 3,429,739 - +0.7 3,429,776 + +0.7 3,429,840 + +0.1 3,430,105 + PS417_15630 0.23 -0.0 3,430,172 + PS417_15630 0.31 -0.3 3,430,234 + PS417_15630 0.39 +0.8 3,430,354 + PS417_15630 0.54 -0.6 3,430,354 + PS417_15630 0.54 +0.2 3,430,354 + PS417_15630 0.54 +0.4 3,430,355 - PS417_15630 0.54 -1.3 3,430,400 + PS417_15630 0.60 +3.3 3,430,453 + PS417_15630 0.67 -1.0 3,430,507 + PS417_15630 0.74 +0.2 3,430,668 + -2.2 3,430,678 + +0.7 3,430,769 + PS417_15635 0.12 -0.2 3,430,776 - PS417_15635 0.13 -1.7 3,430,847 - PS417_15635 0.23 -3.5 3,431,022 - PS417_15635 0.47 -2.7 3,431,089 - PS417_15635 0.56 -1.1 3,431,254 + PS417_15635 0.78 -0.1 3,431,254 + PS417_15635 0.78 +0.6 3,431,255 - PS417_15635 0.78 -0.1 3,431,613 + PS417_15640 0.47 +0.7 3,431,613 + PS417_15640 0.47 -0.7 3,431,614 - PS417_15640 0.47 +0.2 3,432,128 + +0.6 3,432,129 - -0.7 3,432,129 - +0.2 3,432,272 - +0.3
Or see this region's nucleotide sequence