Strain Fitness in Pseudomonas simiae WCS417 around PS417_14845

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_14840 and PS417_14845 are separated by 7 nucleotidesPS417_14845 and PS417_14850 overlap by 4 nucleotidesPS417_14850 and PS417_14855 are separated by 96 nucleotides PS417_14840: PS417_14840 - abortive phage infection protein, at 3,243,937 to 3,244,674 _14840 PS417_14845: PS417_14845 - endoribonuclease L-PSP, at 3,244,682 to 3,245,152 _14845 PS417_14850: PS417_14850 - hypothetical protein, at 3,245,149 to 3,245,367 _14850 PS417_14855: PS417_14855 - gluconolactonase, at 3,245,464 to 3,246,561 _14855 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3243.692 kb on + strandat 3243.692 kb on + strandat 3243.692 kb on + strandat 3243.693 kb on - strandat 3243.693 kb on - strandat 3243.693 kb on - strandat 3243.693 kb on - strandat 3243.693 kb on - strandat 3243.693 kb on - strandat 3243.694 kb on + strandat 3243.694 kb on + strandat 3243.695 kb on - strandat 3243.825 kb on + strandat 3243.873 kb on + strandat 3243.874 kb on - strandat 3243.874 kb on - strandat 3244.170 kb on - strand, within PS417_14840at 3244.221 kb on - strandat 3244.374 kb on + strand, within PS417_14840at 3244.375 kb on - strand, within PS417_14840at 3244.632 kb on - strandat 3244.632 kb on - strandat 3244.632 kb on - strandat 3244.641 kb on - strandat 3244.756 kb on + strand, within PS417_14845at 3244.757 kb on - strand, within PS417_14845at 3245.040 kb on + strand, within PS417_14845at 3245.040 kb on + strand, within PS417_14845at 3245.040 kb on + strandat 3245.041 kb on - strand, within PS417_14845at 3245.074 kb on - strand, within PS417_14845at 3245.074 kb on - strand, within PS417_14845at 3245.134 kb on - strandat 3245.236 kb on - strand, within PS417_14850at 3245.291 kb on - strand, within PS417_14850at 3245.465 kb on + strandat 3245.465 kb on + strandat 3245.490 kb on + strandat 3245.733 kb on - strand, within PS417_14855at 3245.837 kb on + strand, within PS417_14855at 3245.934 kb on - strand, within PS417_14855at 3245.975 kb on + strandat 3245.976 kb on - strand, within PS417_14855at 3246.090 kb on + strandat 3246.090 kb on + strand, within PS417_14855at 3246.091 kb on - strand, within PS417_14855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
3,243,692 + +1.6
3,243,692 + +1.1
3,243,692 + +1.3
3,243,693 - -2.1
3,243,693 - -1.4
3,243,693 - -1.4
3,243,693 - -1.1
3,243,693 - +1.6
3,243,693 - -2.3
3,243,694 + +2.3
3,243,694 + +0.2
3,243,695 - -0.4
3,243,825 + +0.7
3,243,873 + -0.7
3,243,874 - +0.4
3,243,874 - -0.6
3,244,170 - PS417_14840 0.32 -0.9
3,244,221 - -0.3
3,244,374 + PS417_14840 0.59 -0.2
3,244,375 - PS417_14840 0.59 -1.8
3,244,632 - +1.9
3,244,632 - -2.0
3,244,632 - +1.4
3,244,641 - +0.5
3,244,756 + PS417_14845 0.16 -1.4
3,244,757 - PS417_14845 0.16 +0.4
3,245,040 + PS417_14845 0.76 +0.3
3,245,040 + PS417_14845 0.76 +0.4
3,245,040 + +1.9
3,245,041 - PS417_14845 0.76 +0.1
3,245,074 - PS417_14845 0.83 +0.1
3,245,074 - PS417_14845 0.83 -0.3
3,245,134 - -0.2
3,245,236 - PS417_14850 0.40 +0.3
3,245,291 - PS417_14850 0.65 +0.1
3,245,465 + +0.3
3,245,465 + -4.6
3,245,490 + -0.4
3,245,733 - PS417_14855 0.24 +1.2
3,245,837 + PS417_14855 0.34 +1.3
3,245,934 - PS417_14855 0.43 -0.9
3,245,975 + +1.3
3,245,976 - PS417_14855 0.47 +1.6
3,246,090 + +0.3
3,246,090 + PS417_14855 0.57 -0.5
3,246,091 - PS417_14855 0.57 +0.6

Or see this region's nucleotide sequence