Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14715 and PS417_14720 are separated by 134 nucleotides PS417_14720 and PS417_14725 are separated by 52 nucleotides PS417_14725 and PS417_14730 overlap by 1 nucleotides
PS417_14715: PS417_14715 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 3,212,739 to 3,214,226
_14715
PS417_14720: PS417_14720 - MarR family transcriptional regulator, at 3,214,361 to 3,214,774
_14720
PS417_14725: PS417_14725 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 3,214,827 to 3,215,189
_14725
PS417_14730: PS417_14730 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 3,215,189 to 3,217,729
_14730
Position (kb)
3214
3215
3216 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3214.201 kb on - strand at 3214.341 kb on + strand at 3214.342 kb on - strand at 3214.342 kb on - strand at 3214.782 kb on + strand at 3214.783 kb on - strand at 3214.937 kb on + strand, within PS417_14725 at 3214.938 kb on - strand, within PS417_14725 at 3214.939 kb on + strand, within PS417_14725 at 3214.974 kb on - strand, within PS417_14725 at 3214.974 kb on - strand, within PS417_14725 at 3215.038 kb on + strand, within PS417_14725 at 3215.039 kb on - strand, within PS417_14725 at 3215.039 kb on - strand, within PS417_14725 at 3215.069 kb on - strand, within PS417_14725 at 3215.515 kb on - strand, within PS417_14730 at 3215.539 kb on - strand, within PS417_14730 at 3215.620 kb on - strand, within PS417_14730 at 3215.648 kb on + strand, within PS417_14730 at 3215.740 kb on - strand, within PS417_14730 at 3215.961 kb on + strand, within PS417_14730 at 3215.990 kb on + strand, within PS417_14730
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,214,201 - -2.5 3,214,341 + +0.9 3,214,342 - -0.5 3,214,342 - +0.2 3,214,782 + +3.3 3,214,783 - +1.3 3,214,937 + PS417_14725 0.30 -1.8 3,214,938 - PS417_14725 0.31 -1.0 3,214,939 + PS417_14725 0.31 -1.9 3,214,974 - PS417_14725 0.40 -1.5 3,214,974 - PS417_14725 0.40 -2.3 3,215,038 + PS417_14725 0.58 -1.0 3,215,039 - PS417_14725 0.58 -2.6 3,215,039 - PS417_14725 0.58 -1.7 3,215,069 - PS417_14725 0.67 -2.5 3,215,515 - PS417_14730 0.13 +0.7 3,215,539 - PS417_14730 0.14 +0.1 3,215,620 - PS417_14730 0.17 -1.5 3,215,648 + PS417_14730 0.18 -1.4 3,215,740 - PS417_14730 0.22 -0.8 3,215,961 + PS417_14730 0.30 -4.2 3,215,990 + PS417_14730 0.32 -0.4
Or see this region's nucleotide sequence