Strain Fitness in Pseudomonas simiae WCS417 around PS417_13330

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13320 and PS417_13325 overlap by 14 nucleotidesPS417_13325 and PS417_13330 are separated by 15 nucleotidesPS417_13330 and PS417_13335 are separated by 314 nucleotides PS417_13320: PS417_13320 - L-alanine-DL-glutamate epimerase, at 2,927,456 to 2,928,649 _13320 PS417_13325: PS417_13325 - hypothetical protein, at 2,928,636 to 2,929,514 _13325 PS417_13330: PS417_13330 - autotransporter, at 2,929,530 to 2,931,185 _13330 PS417_13335: PS417_13335 - aldo/keto reductase, at 2,931,500 to 2,932,486 _13335 Position (kb) 2929 2930 2931 2932Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2928.631 kb on - strandat 2928.649 kb on + strandat 2928.649 kb on + strandat 2928.728 kb on - strand, within PS417_13325at 2929.253 kb on + strand, within PS417_13325at 2929.253 kb on + strand, within PS417_13325at 2929.254 kb on - strand, within PS417_13325at 2929.254 kb on - strand, within PS417_13325at 2929.396 kb on + strand, within PS417_13325at 2929.579 kb on + strandat 2929.579 kb on + strandat 2929.699 kb on + strand, within PS417_13330at 2929.799 kb on - strand, within PS417_13330at 2929.979 kb on - strandat 2929.982 kb on + strand, within PS417_13330at 2929.993 kb on + strand, within PS417_13330at 2930.035 kb on + strandat 2930.095 kb on - strand, within PS417_13330at 2930.269 kb on + strand, within PS417_13330at 2930.269 kb on + strand, within PS417_13330at 2930.270 kb on - strand, within PS417_13330at 2930.322 kb on + strand, within PS417_13330at 2930.508 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.548 kb on + strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.549 kb on - strand, within PS417_13330at 2930.602 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2930.944 kb on + strand, within PS417_13330at 2931.076 kb on - strandat 2931.100 kb on + strandat 2931.849 kb on - strand, within PS417_13335at 2931.883 kb on + strand, within PS417_13335

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,928,631 - -0.6
2,928,649 + +0.1
2,928,649 + -0.3
2,928,728 - PS417_13325 0.10 -0.1
2,929,253 + PS417_13325 0.70 +0.5
2,929,253 + PS417_13325 0.70 -0.5
2,929,254 - PS417_13325 0.70 -1.0
2,929,254 - PS417_13325 0.70 -0.8
2,929,396 + PS417_13325 0.86 -1.1
2,929,579 + -0.4
2,929,579 + -0.5
2,929,699 + PS417_13330 0.10 -0.2
2,929,799 - PS417_13330 0.16 +0.5
2,929,979 - -0.1
2,929,982 + PS417_13330 0.27 +1.6
2,929,993 + PS417_13330 0.28 +0.3
2,930,035 + +2.3
2,930,095 - PS417_13330 0.34 -1.5
2,930,269 + PS417_13330 0.45 +2.0
2,930,269 + PS417_13330 0.45 +0.3
2,930,270 - PS417_13330 0.45 +0.5
2,930,322 + PS417_13330 0.48 -0.4
2,930,508 + PS417_13330 0.59 -1.1
2,930,548 + PS417_13330 0.61 +1.4
2,930,548 + PS417_13330 0.61 -0.0
2,930,548 + PS417_13330 0.61 +0.8
2,930,548 + PS417_13330 0.61 -1.1
2,930,549 - PS417_13330 0.62 -3.5
2,930,549 - PS417_13330 0.62 -0.2
2,930,549 - PS417_13330 0.62 +2.8
2,930,549 - PS417_13330 0.62 +0.8
2,930,549 - PS417_13330 0.62 +1.4
2,930,602 + PS417_13330 0.65 -1.4
2,930,944 + PS417_13330 0.85 +0.1
2,930,944 + PS417_13330 0.85 -0.3
2,930,944 + PS417_13330 0.85 -0.2
2,930,944 + PS417_13330 0.85 +0.2
2,931,076 - -1.6
2,931,100 + -2.7
2,931,849 - PS417_13335 0.35 +0.0
2,931,883 + PS417_13335 0.39 -0.5

Or see this region's nucleotide sequence