Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11750 and PS417_11755 are separated by 192 nucleotides PS417_11755 and PS417_11760 are separated by 49 nucleotides
PS417_11750: PS417_11750 - TonB-dependent receptor, at 2,554,998 to 2,557,163
_11750
PS417_11755: PS417_11755 - diacetyl reductase, at 2,557,356 to 2,558,135
_11755
PS417_11760: PS417_11760 - Fis family transcriptional regulator, at 2,558,185 to 2,560,050
_11760
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2556.676 kb on + strand, within PS417_11750 at 2556.676 kb on + strand, within PS417_11750 at 2556.676 kb on + strand, within PS417_11750 at 2556.677 kb on - strand, within PS417_11750 at 2556.677 kb on - strand at 2556.704 kb on + strand, within PS417_11750 at 2556.806 kb on - strand, within PS417_11750 at 2556.854 kb on - strand, within PS417_11750 at 2556.872 kb on - strand, within PS417_11750 at 2557.206 kb on - strand at 2557.211 kb on + strand at 2557.211 kb on + strand at 2557.211 kb on + strand at 2557.211 kb on + strand at 2557.212 kb on - strand at 2557.212 kb on - strand at 2557.212 kb on - strand at 2557.321 kb on - strand at 2557.321 kb on - strand at 2557.696 kb on + strand, within PS417_11755 at 2557.916 kb on - strand, within PS417_11755 at 2557.929 kb on - strand, within PS417_11755 at 2557.929 kb on - strand at 2557.998 kb on + strand, within PS417_11755 at 2557.999 kb on - strand, within PS417_11755 at 2558.891 kb on + strand, within PS417_11760
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,556,676 + PS417_11750 0.77 -0.6 2,556,676 + PS417_11750 0.77 +1.2 2,556,676 + PS417_11750 0.77 +2.5 2,556,677 - PS417_11750 0.78 -0.4 2,556,677 - -1.5 2,556,704 + PS417_11750 0.79 -1.2 2,556,806 - PS417_11750 0.83 +1.3 2,556,854 - PS417_11750 0.86 -1.5 2,556,872 - PS417_11750 0.87 +1.6 2,557,206 - -1.0 2,557,211 + -0.8 2,557,211 + -0.7 2,557,211 + -0.0 2,557,211 + -2.9 2,557,212 - -0.2 2,557,212 - -1.3 2,557,212 - -0.4 2,557,321 - -0.5 2,557,321 - +1.0 2,557,696 + PS417_11755 0.44 +2.4 2,557,916 - PS417_11755 0.72 +1.2 2,557,929 - PS417_11755 0.73 +0.2 2,557,929 - -0.9 2,557,998 + PS417_11755 0.82 +0.1 2,557,999 - PS417_11755 0.82 -0.4 2,558,891 + PS417_11760 0.38 -0.9
Or see this region's nucleotide sequence