Strain Fitness in Pseudomonas simiae WCS417 around PS417_10955

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10950 and PS417_10955 overlap by 4 nucleotidesPS417_10955 and PS417_10960 are separated by 57 nucleotides PS417_10950: PS417_10950 - AraC family transcriptional regulator, at 2,343,065 to 2,344,240 _10950 PS417_10955: PS417_10955 - porin, at 2,344,237 to 2,345,502 _10955 PS417_10960: PS417_10960 - quinate dehydrogenase, at 2,345,560 to 2,347,968 _10960 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2343.329 kb on + strand, within PS417_10950at 2343.329 kb on + strand, within PS417_10950at 2343.383 kb on + strand, within PS417_10950at 2343.383 kb on + strand, within PS417_10950at 2343.383 kb on + strand, within PS417_10950at 2343.384 kb on - strand, within PS417_10950at 2343.384 kb on - strand, within PS417_10950at 2343.404 kb on + strand, within PS417_10950at 2343.405 kb on - strand, within PS417_10950at 2343.405 kb on - strand, within PS417_10950at 2343.625 kb on + strand, within PS417_10950at 2343.625 kb on + strand, within PS417_10950at 2343.625 kb on + strand, within PS417_10950at 2343.626 kb on - strand, within PS417_10950at 2343.822 kb on + strand, within PS417_10950at 2343.823 kb on - strand, within PS417_10950at 2344.173 kb on - strandat 2344.238 kb on + strandat 2344.239 kb on - strandat 2344.319 kb on + strandat 2344.319 kb on + strandat 2344.319 kb on + strandat 2344.547 kb on + strand, within PS417_10955at 2344.724 kb on + strand, within PS417_10955at 2344.727 kb on + strand, within PS417_10955at 2344.728 kb on - strand, within PS417_10955at 2344.743 kb on - strand, within PS417_10955at 2344.772 kb on + strand, within PS417_10955at 2345.126 kb on + strand, within PS417_10955at 2345.586 kb on - strandat 2345.636 kb on + strandat 2345.636 kb on + strandat 2345.637 kb on - strandat 2345.664 kb on - strandat 2345.664 kb on - strandat 2345.747 kb on + strandat 2346.127 kb on - strand, within PS417_10960at 2346.447 kb on - strand, within PS417_10960at 2346.447 kb on - strand, within PS417_10960

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,343,329 + PS417_10950 0.22 +2.4
2,343,329 + PS417_10950 0.22 +0.7
2,343,383 + PS417_10950 0.27 +0.2
2,343,383 + PS417_10950 0.27 -0.2
2,343,383 + PS417_10950 0.27 +0.5
2,343,384 - PS417_10950 0.27 +1.1
2,343,384 - PS417_10950 0.27 +5.1
2,343,404 + PS417_10950 0.29 -0.3
2,343,405 - PS417_10950 0.29 +0.1
2,343,405 - PS417_10950 0.29 +1.0
2,343,625 + PS417_10950 0.48 -1.3
2,343,625 + PS417_10950 0.48 +0.4
2,343,625 + PS417_10950 0.48 -0.5
2,343,626 - PS417_10950 0.48 -0.2
2,343,822 + PS417_10950 0.64 +0.2
2,343,823 - PS417_10950 0.64 -0.0
2,344,173 - +0.6
2,344,238 + +0.9
2,344,239 - -0.2
2,344,319 + +0.0
2,344,319 + -0.9
2,344,319 + -0.3
2,344,547 + PS417_10955 0.24 -1.3
2,344,724 + PS417_10955 0.38 -2.7
2,344,727 + PS417_10955 0.39 -1.8
2,344,728 - PS417_10955 0.39 -0.4
2,344,743 - PS417_10955 0.40 -2.5
2,344,772 + PS417_10955 0.42 -1.1
2,345,126 + PS417_10955 0.70 -2.5
2,345,586 - +2.7
2,345,636 + -2.1
2,345,636 + +1.6
2,345,637 - +0.4
2,345,664 - -0.3
2,345,664 - -0.6
2,345,747 + +0.2
2,346,127 - PS417_10960 0.24 -0.8
2,346,447 - PS417_10960 0.37 -1.2
2,346,447 - PS417_10960 0.37 -0.9

Or see this region's nucleotide sequence