Strain Fitness in Pseudomonas simiae WCS417 around PS417_09050

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09045 and PS417_09050 overlap by 1 nucleotidesPS417_09050 and PS417_09055 are separated by 259 nucleotides PS417_09045: PS417_09045 - histidine kinase, at 1,968,993 to 1,970,024 _09045 PS417_09050: PS417_09050 - transcriptional regulator, at 1,970,024 to 1,970,788 _09050 PS417_09055: PS417_09055 - orotidine 5'-phosphate decarboxylase, at 1,971,048 to 1,971,746 _09055 Position (kb) 1970 1971Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1969.327 kb on - strand, within PS417_09045at 1969.454 kb on - strand, within PS417_09045at 1969.454 kb on - strand, within PS417_09045at 1969.647 kb on - strand, within PS417_09045at 1969.777 kb on + strand, within PS417_09045at 1970.053 kb on - strandat 1970.053 kb on - strandat 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strandat 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.427 kb on + strand, within PS417_09050at 1970.427 kb on + strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strandat 1970.914 kb on - strandat 1970.914 kb on - strandat 1970.965 kb on + strandat 1970.969 kb on + strandat 1970.969 kb on + strandat 1971.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,969,327 - PS417_09045 0.32 -1.0
1,969,454 - PS417_09045 0.45 -0.9
1,969,454 - PS417_09045 0.45 -2.3
1,969,647 - PS417_09045 0.63 -1.8
1,969,777 + PS417_09045 0.76 +0.7
1,970,053 - -2.1
1,970,053 - -0.3
1,970,425 + PS417_09050 0.52 -0.9
1,970,425 + PS417_09050 0.52 -0.1
1,970,425 + +1.0
1,970,425 + PS417_09050 0.52 -1.4
1,970,425 + PS417_09050 0.52 -0.1
1,970,425 + PS417_09050 0.52 +1.3
1,970,425 + PS417_09050 0.52 +0.0
1,970,426 - PS417_09050 0.53 +2.0
1,970,426 - PS417_09050 0.53 +0.5
1,970,426 - PS417_09050 0.53 +1.3
1,970,426 - PS417_09050 0.53 +0.5
1,970,426 - PS417_09050 0.53 +1.5
1,970,426 - PS417_09050 0.53 -2.1
1,970,426 - PS417_09050 0.53 -0.2
1,970,426 - PS417_09050 0.53 +2.6
1,970,426 - PS417_09050 0.53 -0.0
1,970,427 + PS417_09050 0.53 +0.1
1,970,427 + PS417_09050 0.53 +0.1
1,970,428 - PS417_09050 0.53 -2.1
1,970,428 - PS417_09050 0.53 +0.1
1,970,428 - PS417_09050 0.53 +1.2
1,970,428 - PS417_09050 0.53 -0.6
1,970,428 - -0.9
1,970,914 - -1.9
1,970,914 - -0.7
1,970,965 + +3.0
1,970,969 + -2.6
1,970,969 + -2.0
1,971,006 + +3.4

Or see this region's nucleotide sequence