Strain Fitness in Pseudomonas simiae WCS417 around PS417_08645

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08640 and PS417_08645 are separated by 156 nucleotidesPS417_08645 and PS417_08650 are separated by 74 nucleotidesPS417_08650 and PS417_08655 are separated by 73 nucleotides PS417_08640: PS417_08640 - sodium:proton antiporter, at 1,886,806 to 1,888,536 _08640 PS417_08645: PS417_08645 - glutaredoxin, at 1,888,693 to 1,888,929 _08645 PS417_08650: PS417_08650 - transcriptional regulator, at 1,889,004 to 1,889,339 _08650 PS417_08655: PS417_08655 - pseudouridine synthase, at 1,889,413 to 1,890,303 _08655 Position (kb) 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1887.780 kb on - strand, within PS417_08640at 1888.448 kb on + strandat 1888.448 kb on + strandat 1888.449 kb on - strandat 1888.593 kb on - strandat 1888.594 kb on + strandat 1888.595 kb on - strandat 1888.655 kb on + strandat 1888.656 kb on - strandat 1888.668 kb on + strandat 1888.712 kb on + strandat 1888.713 kb on - strandat 1888.713 kb on - strandat 1888.715 kb on + strandat 1888.716 kb on - strandat 1888.835 kb on - strand, within PS417_08645at 1888.955 kb on + strandat 1889.224 kb on - strand, within PS417_08650at 1889.232 kb on + strand, within PS417_08650at 1889.350 kb on - strandat 1889.461 kb on + strandat 1889.462 kb on - strandat 1889.462 kb on - strandat 1889.462 kb on - strandat 1889.605 kb on + strand, within PS417_08655at 1889.626 kb on + strand, within PS417_08655at 1889.626 kb on + strand, within PS417_08655at 1889.627 kb on - strand, within PS417_08655at 1889.627 kb on - strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.629 kb on + strand, within PS417_08655at 1889.821 kb on - strand, within PS417_08655at 1889.921 kb on - strand, within PS417_08655at 1889.921 kb on - strand, within PS417_08655

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,887,780 - PS417_08640 0.56 +0.6
1,888,448 + +1.4
1,888,448 + -1.8
1,888,449 - -2.7
1,888,593 - +0.3
1,888,594 + -1.0
1,888,595 - -0.0
1,888,655 + +0.1
1,888,656 - -1.7
1,888,668 + -0.7
1,888,712 + +0.5
1,888,713 - +2.6
1,888,713 - +0.0
1,888,715 + -0.4
1,888,716 - -0.9
1,888,835 - PS417_08645 0.60 -1.1
1,888,955 + +1.4
1,889,224 - PS417_08650 0.65 -0.3
1,889,232 + PS417_08650 0.68 -1.4
1,889,350 - +0.2
1,889,461 + -2.6
1,889,462 - +1.0
1,889,462 - -3.5
1,889,462 - -1.9
1,889,605 + PS417_08655 0.22 -0.7
1,889,626 + PS417_08655 0.24 +0.3
1,889,626 + PS417_08655 0.24 +0.6
1,889,627 - PS417_08655 0.24 +2.7
1,889,627 - PS417_08655 0.24 -0.5
1,889,629 + PS417_08655 0.24 -0.9
1,889,629 + PS417_08655 0.24 -0.4
1,889,629 + PS417_08655 0.24 -0.2
1,889,629 + PS417_08655 0.24 -1.6
1,889,821 - PS417_08655 0.46 -2.2
1,889,921 - PS417_08655 0.57 +1.1
1,889,921 - PS417_08655 0.57 +0.3

Or see this region's nucleotide sequence