Strain Fitness in Pseudomonas simiae WCS417 around PS417_07995

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07980 and PS417_07985 overlap by 4 nucleotidesPS417_07985 and PS417_07990 are separated by 154 nucleotidesPS417_07990 and PS417_07995 are separated by 1 nucleotidesPS417_07995 and PS417_08000 are separated by 150 nucleotides PS417_07980: PS417_07980 - twitching motility protein PilT, at 1,747,128 to 1,747,523 _07980 PS417_07985: PS417_07985 - AbrB family transcriptional regulator, at 1,747,520 to 1,747,777 _07985 PS417_07990: PS417_07990 - endoribonuclease L-PSP, at 1,747,932 to 1,748,324 _07990 PS417_07995: PS417_07995 - LOG family protein, at 1,748,326 to 1,749,699 _07995 PS417_08000: PS417_08000 - beta-hydroxylase, at 1,749,850 to 1,750,674 _08000 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1747.509 kb on - strandat 1747.636 kb on + strand, within PS417_07985at 1747.834 kb on + strandat 1747.855 kb on + strandat 1747.856 kb on - strandat 1747.869 kb on + strandat 1747.869 kb on + strandat 1747.869 kb on + strandat 1747.924 kb on + strandat 1747.924 kb on + strandat 1747.924 kb on + strandat 1747.925 kb on - strandat 1747.931 kb on + strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1747.932 kb on - strandat 1748.026 kb on - strand, within PS417_07990at 1748.119 kb on + strand, within PS417_07990at 1748.120 kb on - strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.169 kb on + strand, within PS417_07990at 1748.170 kb on - strand, within PS417_07990at 1748.354 kb on + strandat 1748.354 kb on + strandat 1748.354 kb on + strandat 1748.355 kb on - strandat 1748.404 kb on + strandat 1748.405 kb on - strandat 1748.494 kb on + strand, within PS417_07995at 1748.494 kb on + strand, within PS417_07995at 1748.495 kb on - strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.197 kb on + strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.198 kb on - strand, within PS417_07995at 1749.203 kb on + strand, within PS417_07995at 1749.204 kb on - strand, within PS417_07995at 1749.269 kb on - strand, within PS417_07995at 1749.302 kb on + strand, within PS417_07995at 1749.302 kb on + strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.303 kb on - strand, within PS417_07995at 1749.510 kb on - strand, within PS417_07995at 1749.583 kb on + strandat 1749.590 kb on + strandat 1749.591 kb on - strandat 1749.591 kb on - strandat 1749.591 kb on - strandat 1749.591 kb on - strandat 1749.791 kb on - strandat 1749.795 kb on - strandat 1749.851 kb on + strandat 1750.036 kb on - strand, within PS417_08000at 1750.059 kb on - strand, within PS417_08000at 1750.086 kb on - strand, within PS417_08000at 1750.086 kb on - strand, within PS417_08000at 1750.086 kb on - strand, within PS417_08000at 1750.121 kb on + strand, within PS417_08000at 1750.122 kb on - strand, within PS417_08000at 1750.268 kb on + strand, within PS417_08000at 1750.412 kb on + strand, within PS417_08000at 1750.412 kb on + strand, within PS417_08000at 1750.412 kb on + strand, within PS417_08000at 1750.413 kb on - strand, within PS417_08000at 1750.413 kb on - strand, within PS417_08000at 1750.413 kb on - strand, within PS417_08000at 1750.523 kb on + strand, within PS417_08000at 1750.524 kb on - strand, within PS417_08000at 1750.551 kb on + strand, within PS417_08000at 1750.552 kb on - strand, within PS417_08000at 1750.579 kb on + strand, within PS417_08000at 1750.579 kb on + strand, within PS417_08000at 1750.579 kb on + strand, within PS417_08000at 1750.580 kb on - strand, within PS417_08000at 1750.602 kb on + strandat 1750.602 kb on + strandat 1750.602 kb on + strandat 1750.602 kb on + strandat 1750.603 kb on - strandat 1750.603 kb on - strandat 1750.603 kb on - strandat 1750.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,747,509 - -0.1
1,747,636 + PS417_07985 0.45 +1.3
1,747,834 + -0.2
1,747,855 + -0.1
1,747,856 - +0.4
1,747,869 + -0.1
1,747,869 + +1.1
1,747,869 + +1.6
1,747,924 + +0.8
1,747,924 + +2.2
1,747,924 + +0.2
1,747,925 - -0.9
1,747,931 + +2.5
1,747,932 - +1.1
1,747,932 - -0.3
1,747,932 - +0.9
1,747,932 - -0.6
1,748,026 - PS417_07990 0.24 -1.0
1,748,119 + PS417_07990 0.48 +0.9
1,748,120 - PS417_07990 0.48 -1.2
1,748,169 + PS417_07990 0.60 -0.0
1,748,169 + PS417_07990 0.60 -0.1
1,748,169 + PS417_07990 0.60 -0.9
1,748,169 + PS417_07990 0.60 +1.5
1,748,169 + PS417_07990 0.60 +0.7
1,748,170 - PS417_07990 0.61 +1.4
1,748,354 + -1.0
1,748,354 + -4.0
1,748,354 + -2.4
1,748,355 - -0.7
1,748,404 + -2.1
1,748,405 - -2.5
1,748,494 + PS417_07995 0.12 +2.3
1,748,494 + PS417_07995 0.12 -0.6
1,748,495 - PS417_07995 0.12 +1.0
1,749,197 + PS417_07995 0.63 -1.8
1,749,197 + PS417_07995 0.63 +0.6
1,749,197 + PS417_07995 0.63 +0.1
1,749,198 - PS417_07995 0.63 +1.7
1,749,198 - PS417_07995 0.63 -1.5
1,749,198 - PS417_07995 0.63 -0.2
1,749,203 + PS417_07995 0.64 -0.5
1,749,204 - PS417_07995 0.64 -0.0
1,749,269 - PS417_07995 0.69 -1.7
1,749,302 + PS417_07995 0.71 +2.2
1,749,302 + PS417_07995 0.71 +2.6
1,749,303 - PS417_07995 0.71 -2.2
1,749,303 - PS417_07995 0.71 -0.6
1,749,303 - PS417_07995 0.71 +0.1
1,749,303 - PS417_07995 0.71 +0.2
1,749,303 - PS417_07995 0.71 +0.9
1,749,510 - PS417_07995 0.86 +0.4
1,749,583 + -2.1
1,749,590 + +0.2
1,749,591 - -0.9
1,749,591 - +0.0
1,749,591 - +1.1
1,749,591 - -1.7
1,749,791 - -0.5
1,749,795 - -0.6
1,749,851 + -1.4
1,750,036 - PS417_08000 0.23 +1.6
1,750,059 - PS417_08000 0.25 -1.0
1,750,086 - PS417_08000 0.29 +0.1
1,750,086 - PS417_08000 0.29 +0.1
1,750,086 - PS417_08000 0.29 +2.3
1,750,121 + PS417_08000 0.33 +0.5
1,750,122 - PS417_08000 0.33 +0.6
1,750,268 + PS417_08000 0.51 -2.2
1,750,412 + PS417_08000 0.68 +0.0
1,750,412 + PS417_08000 0.68 -2.6
1,750,412 + PS417_08000 0.68 -2.0
1,750,413 - PS417_08000 0.68 -1.2
1,750,413 - PS417_08000 0.68 +2.4
1,750,413 - PS417_08000 0.68 +0.7
1,750,523 + PS417_08000 0.82 +0.6
1,750,524 - PS417_08000 0.82 +1.0
1,750,551 + PS417_08000 0.85 -0.8
1,750,552 - PS417_08000 0.85 -0.2
1,750,579 + PS417_08000 0.88 -0.4
1,750,579 + PS417_08000 0.88 -1.7
1,750,579 + PS417_08000 0.88 +0.2
1,750,580 - PS417_08000 0.88 -0.8
1,750,602 + +0.1
1,750,602 + +0.9
1,750,602 + +0.6
1,750,602 + -0.5
1,750,603 - -1.9
1,750,603 - -0.9
1,750,603 - +0.3
1,750,654 - +0.4

Or see this region's nucleotide sequence