Strain Fitness in Pseudomonas simiae WCS417 around PS417_05225

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05220 and PS417_05225 overlap by 4 nucleotidesPS417_05225 and PS417_05230 are separated by 36 nucleotidesPS417_05230 and PS417_05235 are separated by 1 nucleotides PS417_05220: PS417_05220 - tRNA methyltransferase, at 1,158,052 to 1,159,008 _05220 PS417_05225: PS417_05225 - tRNA methyltransferase, at 1,159,005 to 1,159,748 _05225 PS417_05230: PS417_05230 - membrane protein, at 1,159,785 to 1,160,441 _05230 PS417_05235: PS417_05235 - peptidase inhibitor I42, at 1,160,443 to 1,160,832 _05235 Position (kb) 1159 1160Strain fitness (log2 ratio) -2 -1 0 1 2at 1158.149 kb on + strand, within PS417_05220at 1158.149 kb on + strand, within PS417_05220at 1158.212 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.275 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.280 kb on - strand, within PS417_05220at 1158.423 kb on - strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.614 kb on + strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1158.615 kb on - strand, within PS417_05220at 1159.191 kb on - strand, within PS417_05225at 1159.191 kb on - strand, within PS417_05225at 1159.444 kb on + strand, within PS417_05225at 1159.444 kb on + strand, within PS417_05225at 1159.564 kb on + strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.565 kb on - strand, within PS417_05225at 1159.861 kb on + strand, within PS417_05230at 1159.861 kb on + strand, within PS417_05230at 1159.879 kb on + strand, within PS417_05230at 1160.035 kb on - strand, within PS417_05230at 1160.044 kb on + strand, within PS417_05230at 1160.044 kb on + strand, within PS417_05230at 1160.044 kb on + strand, within PS417_05230at 1160.044 kb on + strand, within PS417_05230at 1160.167 kb on + strand, within PS417_05230at 1160.395 kb on + strandat 1160.395 kb on + strandat 1160.441 kb on + strandat 1160.441 kb on + strandat 1160.606 kb on + strand, within PS417_05235at 1160.607 kb on - strand, within PS417_05235

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,158,149 + PS417_05220 0.10 +1.0
1,158,149 + PS417_05220 0.10 +0.2
1,158,212 - PS417_05220 0.17 +0.2
1,158,275 - PS417_05220 0.23 -1.1
1,158,275 - PS417_05220 0.23 -1.3
1,158,280 - PS417_05220 0.24 +2.1
1,158,280 - PS417_05220 0.24 -1.2
1,158,423 - PS417_05220 0.39 +1.4
1,158,614 + PS417_05220 0.59 +0.2
1,158,614 + PS417_05220 0.59 -1.3
1,158,615 - PS417_05220 0.59 -0.1
1,158,615 - PS417_05220 0.59 -1.2
1,158,615 - PS417_05220 0.59 -0.4
1,159,191 - PS417_05225 0.25 -1.0
1,159,191 - PS417_05225 0.25 -1.0
1,159,444 + PS417_05225 0.59 -0.6
1,159,444 + PS417_05225 0.59 -0.6
1,159,564 + PS417_05225 0.75 -0.4
1,159,565 - PS417_05225 0.75 -1.9
1,159,565 - PS417_05225 0.75 -0.5
1,159,565 - PS417_05225 0.75 +0.3
1,159,861 + PS417_05230 0.12 -1.7
1,159,861 + PS417_05230 0.12 +0.2
1,159,879 + PS417_05230 0.14 -0.7
1,160,035 - PS417_05230 0.38 +2.1
1,160,044 + PS417_05230 0.39 -0.5
1,160,044 + PS417_05230 0.39 -0.5
1,160,044 + PS417_05230 0.39 +0.2
1,160,044 + PS417_05230 0.39 -0.4
1,160,167 + PS417_05230 0.58 -1.9
1,160,395 + +0.3
1,160,395 + -2.3
1,160,441 + -0.9
1,160,441 + -2.4
1,160,606 + PS417_05235 0.42 -0.9
1,160,607 - PS417_05235 0.42 +0.2

Or see this region's nucleotide sequence