Strain Fitness in Pseudomonas simiae WCS417 around PS417_10345

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10340 and PS417_10345 overlap by 20 nucleotidesPS417_10345 and PS417_10350 are separated by 173 nucleotides PS417_10340: PS417_10340 - alcohol dehydrogenase, at 2,209,898 to 2,210,869 _10340 PS417_10345: PS417_10345 - MFS transporter, at 2,210,850 to 2,212,076 _10345 PS417_10350: PS417_10350 - multidrug MFS transporter, at 2,212,250 to 2,213,542 _10350 Position (kb) 2210 2211 2212 2213Strain fitness (log2 ratio) -2 -1 0 1at 2210.159 kb on + strand, within PS417_10340at 2210.160 kb on - strand, within PS417_10340at 2210.434 kb on - strand, within PS417_10340at 2210.454 kb on - strand, within PS417_10340at 2210.480 kb on - strand, within PS417_10340at 2210.531 kb on + strand, within PS417_10340at 2210.583 kb on - strand, within PS417_10340at 2210.639 kb on - strand, within PS417_10340at 2211.035 kb on + strand, within PS417_10345at 2211.094 kb on + strand, within PS417_10345at 2211.246 kb on + strand, within PS417_10345at 2211.246 kb on + strand, within PS417_10345at 2211.355 kb on + strand, within PS417_10345at 2211.647 kb on + strand, within PS417_10345at 2211.682 kb on - strand, within PS417_10345at 2211.682 kb on - strand, within PS417_10345at 2211.716 kb on + strand, within PS417_10345at 2211.716 kb on + strand, within PS417_10345at 2212.009 kb on - strandat 2212.142 kb on - strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.163 kb on + strandat 2212.164 kb on - strandat 2212.183 kb on - strandat 2212.370 kb on - strandat 2212.850 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.859 kb on + strand, within PS417_10350at 2212.860 kb on - strand, within PS417_10350at 2212.860 kb on - strand, within PS417_10350at 2213.040 kb on - strand, within PS417_10350

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,210,159 + PS417_10340 0.27 -0.2
2,210,160 - PS417_10340 0.27 -1.1
2,210,434 - PS417_10340 0.55 +1.0
2,210,454 - PS417_10340 0.57 -1.8
2,210,480 - PS417_10340 0.60 -0.3
2,210,531 + PS417_10340 0.65 -1.3
2,210,583 - PS417_10340 0.70 -0.3
2,210,639 - PS417_10340 0.76 -0.6
2,211,035 + PS417_10345 0.15 +0.1
2,211,094 + PS417_10345 0.20 -0.1
2,211,246 + PS417_10345 0.32 +1.1
2,211,246 + PS417_10345 0.32 -0.0
2,211,355 + PS417_10345 0.41 -1.2
2,211,647 + PS417_10345 0.65 +0.9
2,211,682 - PS417_10345 0.68 -0.1
2,211,682 - PS417_10345 0.68 +0.1
2,211,716 + PS417_10345 0.71 -0.1
2,211,716 + PS417_10345 0.71 +0.1
2,212,009 - -1.0
2,212,142 - -0.0
2,212,163 + -0.5
2,212,163 + -1.4
2,212,163 + +0.8
2,212,163 + +0.4
2,212,164 - -1.0
2,212,183 - +1.0
2,212,370 - -0.3
2,212,850 + PS417_10350 0.46 +0.6
2,212,859 + PS417_10350 0.47 -0.2
2,212,859 + PS417_10350 0.47 +0.4
2,212,859 + PS417_10350 0.47 +0.5
2,212,859 + PS417_10350 0.47 -0.4
2,212,860 - PS417_10350 0.47 -0.4
2,212,860 - PS417_10350 0.47 -1.3
2,213,040 - PS417_10350 0.61 -0.1

Or see this region's nucleotide sequence