Strain Fitness in Pseudomonas simiae WCS417 around PS417_04770

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04765 and PS417_04770 are separated by 111 nucleotidesPS417_04770 and PS417_04775 overlap by 4 nucleotidesPS417_04775 and PS417_04780 are separated by 14 nucleotides PS417_04765: PS417_04765 - membrane protein, at 1,056,383 to 1,057,567 _04765 PS417_04770: PS417_04770 - LysR family transcriptional regulator, at 1,057,679 to 1,058,536 _04770 PS417_04775: PS417_04775 - short-chain dehydrogenase, at 1,058,533 to 1,059,345 _04775 PS417_04780: PS417_04780 - multidrug transporter, at 1,059,360 to 1,059,824 _04780 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -1 0 1 2at 1056.716 kb on + strand, within PS417_04765at 1056.716 kb on + strand, within PS417_04765at 1056.717 kb on - strand, within PS417_04765at 1056.909 kb on - strand, within PS417_04765at 1056.927 kb on + strand, within PS417_04765at 1056.928 kb on - strand, within PS417_04765at 1057.077 kb on + strandat 1057.078 kb on - strand, within PS417_04765at 1057.078 kb on - strand, within PS417_04765at 1057.154 kb on + strand, within PS417_04765at 1057.259 kb on + strand, within PS417_04765at 1057.874 kb on + strandat 1057.874 kb on + strand, within PS417_04770at 1057.875 kb on - strand, within PS417_04770at 1057.875 kb on - strand, within PS417_04770at 1057.967 kb on - strand, within PS417_04770at 1058.052 kb on + strand, within PS417_04770at 1058.203 kb on + strand, within PS417_04770at 1058.204 kb on - strand, within PS417_04770at 1058.294 kb on + strand, within PS417_04770at 1058.466 kb on - strandat 1058.680 kb on + strand, within PS417_04775at 1058.680 kb on + strandat 1058.680 kb on + strand, within PS417_04775at 1058.680 kb on + strand, within PS417_04775at 1058.681 kb on - strand, within PS417_04775at 1058.681 kb on - strand, within PS417_04775at 1058.681 kb on - strand, within PS417_04775

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,056,716 + PS417_04765 0.28 +0.7
1,056,716 + PS417_04765 0.28 -1.5
1,056,717 - PS417_04765 0.28 -0.2
1,056,909 - PS417_04765 0.44 -0.3
1,056,927 + PS417_04765 0.46 -0.1
1,056,928 - PS417_04765 0.46 -0.1
1,057,077 + -0.6
1,057,078 - PS417_04765 0.59 +0.2
1,057,078 - PS417_04765 0.59 -0.7
1,057,154 + PS417_04765 0.65 +1.3
1,057,259 + PS417_04765 0.74 -1.3
1,057,874 + +0.1
1,057,874 + PS417_04770 0.23 +0.0
1,057,875 - PS417_04770 0.23 -0.4
1,057,875 - PS417_04770 0.23 -0.6
1,057,967 - PS417_04770 0.34 -0.2
1,058,052 + PS417_04770 0.43 -0.4
1,058,203 + PS417_04770 0.61 -0.5
1,058,204 - PS417_04770 0.61 -1.5
1,058,294 + PS417_04770 0.72 -1.2
1,058,466 - -1.3
1,058,680 + PS417_04775 0.18 -1.3
1,058,680 + -0.5
1,058,680 + PS417_04775 0.18 +0.7
1,058,680 + PS417_04775 0.18 -1.2
1,058,681 - PS417_04775 0.18 -1.1
1,058,681 - PS417_04775 0.18 +2.0
1,058,681 - PS417_04775 0.18 +0.0

Or see this region's nucleotide sequence