Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02860 and PS417_02865 are separated by 152 nucleotides PS417_02865 and PS417_02870 are separated by 115 nucleotides
PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448
_02860
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 653.638 kb on - strand, within PS417_02860 at 653.638 kb on - strand, within PS417_02860 at 653.848 kb on - strand, within PS417_02860 at 653.905 kb on - strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.087 kb on + strand, within PS417_02860 at 654.088 kb on - strand, within PS417_02860 at 654.106 kb on - strand, within PS417_02860 at 654.439 kb on - strand at 654.439 kb on - strand at 654.439 kb on - strand at 654.523 kb on - strand at 654.646 kb on + strand at 654.941 kb on + strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 654.942 kb on - strand, within PS417_02865 at 655.329 kb on - strand, within PS417_02865 at 655.619 kb on + strand, within PS417_02865 at 655.739 kb on + strand at 655.740 kb on - strand, within PS417_02865 at 655.842 kb on - strand, within PS417_02865 at 655.874 kb on + strand at 655.875 kb on - strand at 656.415 kb on + strand, within PS417_02870 at 656.653 kb on - strand, within PS417_02870 at 656.826 kb on + strand, within PS417_02870
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 653,638 - PS417_02860 0.62 +0.5 653,638 - PS417_02860 0.62 +0.9 653,848 - PS417_02860 0.72 +0.0 653,905 - PS417_02860 0.74 -2.2 654,087 + PS417_02860 0.83 -0.6 654,087 + PS417_02860 0.83 +0.0 654,088 - PS417_02860 0.83 +0.2 654,106 - PS417_02860 0.84 -0.1 654,439 - -0.8 654,439 - -0.2 654,439 - -0.5 654,523 - +0.0 654,646 + -1.5 654,941 + PS417_02865 0.25 +1.5 654,942 - PS417_02865 0.25 -1.8 654,942 - PS417_02865 0.25 -1.3 655,329 - PS417_02865 0.53 -0.6 655,619 + PS417_02865 0.74 -0.6 655,739 + +1.8 655,740 - PS417_02865 0.82 -2.4 655,842 - PS417_02865 0.90 -2.1 655,874 + -0.6 655,875 - +0.0 656,415 + PS417_02870 0.15 -0.3 656,653 - PS417_02870 0.27 +0.2 656,826 + PS417_02870 0.35 -0.4
Or see this region's nucleotide sequence