Strain Fitness in Pseudomonas simiae WCS417 around PS417_00475

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00470 and PS417_00475 are separated by 98 nucleotidesPS417_00475 and PS417_00480 are separated by 103 nucleotidesPS417_00480 and PS417_00485 overlap by 4 nucleotides PS417_00470: PS417_00470 - glutamate:protein symporter, at 92,676 to 94,007 _00470 PS417_00475: PS417_00475 - membrane protein, at 94,106 to 95,335 _00475 PS417_00480: PS417_00480 - hypothetical protein, at 95,439 to 96,050 _00480 PS417_00485: PS417_00485 - ABC transporter permease, at 96,047 to 96,985 _00485 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.122 kb on + strand, within PS417_00470at 93.289 kb on - strand, within PS417_00470at 93.495 kb on + strand, within PS417_00470at 93.628 kb on - strand, within PS417_00470at 93.628 kb on - strand, within PS417_00470at 93.663 kb on + strand, within PS417_00470at 93.663 kb on + strand, within PS417_00470at 93.664 kb on - strand, within PS417_00470at 93.664 kb on - strand, within PS417_00470at 93.731 kb on + strand, within PS417_00470at 93.732 kb on - strand, within PS417_00470at 93.915 kb on + strandat 93.915 kb on + strandat 93.915 kb on + strandat 93.915 kb on + strandat 93.915 kb on + strandat 93.916 kb on - strandat 93.916 kb on - strandat 93.916 kb on - strandat 94.072 kb on + strandat 94.725 kb on - strand, within PS417_00475at 94.725 kb on - strand, within PS417_00475at 94.886 kb on + strand, within PS417_00475at 94.909 kb on + strand, within PS417_00475at 95.207 kb on + strand, within PS417_00475at 95.207 kb on + strand, within PS417_00475at 95.207 kb on + strand, within PS417_00475at 95.208 kb on - strand, within PS417_00475at 95.208 kb on - strand, within PS417_00475at 95.208 kb on - strand, within PS417_00475at 95.223 kb on - strandat 95.318 kb on + strandat 95.319 kb on - strandat 95.374 kb on + strandat 95.375 kb on - strandat 95.375 kb on - strandat 95.698 kb on + strand, within PS417_00480at 95.699 kb on - strand, within PS417_00480at 95.717 kb on + strand, within PS417_00480at 95.768 kb on + strand, within PS417_00480at 95.821 kb on + strand, within PS417_00480at 96.018 kb on + strandat 96.019 kb on - strandat 96.030 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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93,122 + PS417_00470 0.33 +1.8
93,289 - PS417_00470 0.46 +1.5
93,495 + PS417_00470 0.61 +0.7
93,628 - PS417_00470 0.71 +0.1
93,628 - PS417_00470 0.71 -0.1
93,663 + PS417_00470 0.74 +1.7
93,663 + PS417_00470 0.74 +1.1
93,664 - PS417_00470 0.74 -3.1
93,664 - PS417_00470 0.74 -0.7
93,731 + PS417_00470 0.79 +1.0
93,732 - PS417_00470 0.79 -0.8
93,915 + -1.3
93,915 + -0.1
93,915 + -0.1
93,915 + +1.2
93,915 + +0.8
93,916 - +0.8
93,916 - -2.0
93,916 - +0.2
94,072 + +1.1
94,725 - PS417_00475 0.50 -0.8
94,725 - PS417_00475 0.50 -1.7
94,886 + PS417_00475 0.63 -3.2
94,909 + PS417_00475 0.65 -0.8
95,207 + PS417_00475 0.90 -3.7
95,207 + PS417_00475 0.90 -1.5
95,207 + PS417_00475 0.90 -1.4
95,208 - PS417_00475 0.90 +0.2
95,208 - PS417_00475 0.90 -1.1
95,208 - PS417_00475 0.90 -0.7
95,223 - -0.0
95,318 + +0.8
95,319 - +1.6
95,374 + +1.1
95,375 - +0.1
95,375 - +0.0
95,698 + PS417_00480 0.42 -0.4
95,699 - PS417_00480 0.42 -0.3
95,717 + PS417_00480 0.45 +1.2
95,768 + PS417_00480 0.54 -0.8
95,821 + PS417_00480 0.62 +1.4
96,018 + -0.4
96,019 - +0.1
96,030 + +1.8

Or see this region's nucleotide sequence