Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21485 and PS417_21490 are separated by 171 nucleotides PS417_21490 and PS417_21495 overlap by 4 nucleotides PS417_21495 and PS417_21500 are separated by 140 nucleotides
PS417_21485: PS417_21485 - ribonuclease E, at 4,663,132 to 4,666,278
_21485
PS417_21490: PS417_21490 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 4,666,450 to 4,667,040
_21490
PS417_21495: PS417_21495 - lipoprotein, at 4,667,037 to 4,668,023
_21495
PS417_21500: PS417_21500 - C4 dicarboxylate transporter DctA (from data) , at 4,668,164 to 4,669,495
_21500
Position (kb)
4667
4668
4669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4666.329 kb on + strand at 4666.346 kb on + strand at 4666.513 kb on + strand, within PS417_21490 at 4666.513 kb on + strand, within PS417_21490 at 4666.513 kb on + strand, within PS417_21490 at 4666.514 kb on - strand, within PS417_21490 at 4666.514 kb on - strand, within PS417_21490 at 4666.606 kb on - strand, within PS417_21490 at 4666.626 kb on - strand, within PS417_21490 at 4666.773 kb on + strand, within PS417_21490 at 4666.773 kb on + strand, within PS417_21490 at 4666.774 kb on - strand, within PS417_21490 at 4666.945 kb on + strand, within PS417_21490 at 4666.946 kb on - strand, within PS417_21490 at 4667.263 kb on + strand, within PS417_21495 at 4667.492 kb on - strand, within PS417_21495 at 4667.492 kb on - strand, within PS417_21495 at 4667.542 kb on + strand, within PS417_21495 at 4667.542 kb on + strand, within PS417_21495 at 4667.543 kb on - strand, within PS417_21495 at 4667.951 kb on - strand at 4668.025 kb on + strand at 4668.025 kb on + strand at 4668.026 kb on - strand at 4668.026 kb on - strand at 4668.026 kb on - strand at 4668.026 kb on - strand at 4668.049 kb on + strand at 4668.050 kb on - strand at 4668.063 kb on - strand at 4668.127 kb on + strand at 4668.128 kb on - strand at 4668.144 kb on + strand at 4668.145 kb on - strand at 4668.229 kb on + strand at 4668.567 kb on + strand, within PS417_21500 at 4668.568 kb on - strand, within PS417_21500 at 4668.620 kb on + strand, within PS417_21500 at 4668.695 kb on - strand, within PS417_21500 at 4668.727 kb on - strand, within PS417_21500 at 4668.727 kb on - strand, within PS417_21500 at 4668.769 kb on + strand, within PS417_21500 at 4668.770 kb on - strand, within PS417_21500 at 4668.770 kb on - strand, within PS417_21500 at 4668.810 kb on + strand, within PS417_21500 at 4668.810 kb on + strand, within PS417_21500 at 4668.811 kb on - strand, within PS417_21500 at 4668.851 kb on + strand, within PS417_21500 at 4668.852 kb on - strand, within PS417_21500
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,666,329 + -2.8 4,666,346 + -1.0 4,666,513 + PS417_21490 0.11 +0.2 4,666,513 + PS417_21490 0.11 +1.5 4,666,513 + PS417_21490 0.11 -1.1 4,666,514 - PS417_21490 0.11 +0.5 4,666,514 - PS417_21490 0.11 +0.3 4,666,606 - PS417_21490 0.26 +0.1 4,666,626 - PS417_21490 0.30 +0.2 4,666,773 + PS417_21490 0.55 -1.4 4,666,773 + PS417_21490 0.55 -0.5 4,666,774 - PS417_21490 0.55 -0.1 4,666,945 + PS417_21490 0.84 -0.3 4,666,946 - PS417_21490 0.84 +0.2 4,667,263 + PS417_21495 0.23 -0.8 4,667,492 - PS417_21495 0.46 -1.5 4,667,492 - PS417_21495 0.46 -1.2 4,667,542 + PS417_21495 0.51 -0.1 4,667,542 + PS417_21495 0.51 -0.5 4,667,543 - PS417_21495 0.51 -0.9 4,667,951 - +0.5 4,668,025 + +0.4 4,668,025 + +0.1 4,668,026 - +0.1 4,668,026 - +2.9 4,668,026 - -0.2 4,668,026 - +1.6 4,668,049 + +0.6 4,668,050 - +0.4 4,668,063 - -1.2 4,668,127 + +0.0 4,668,128 - -2.3 4,668,144 + -1.3 4,668,145 - +0.3 4,668,229 + +1.8 4,668,567 + PS417_21500 0.30 -0.3 4,668,568 - PS417_21500 0.30 -0.2 4,668,620 + PS417_21500 0.34 +1.5 4,668,695 - PS417_21500 0.40 -0.8 4,668,727 - PS417_21500 0.42 +0.4 4,668,727 - PS417_21500 0.42 -0.4 4,668,769 + PS417_21500 0.45 -1.8 4,668,770 - PS417_21500 0.45 +0.1 4,668,770 - PS417_21500 0.45 +0.5 4,668,810 + PS417_21500 0.48 -0.3 4,668,810 + PS417_21500 0.48 +0.1 4,668,811 - PS417_21500 0.49 -0.2 4,668,851 + PS417_21500 0.52 -1.2 4,668,852 - PS417_21500 0.52 -1.3
Or see this region's nucleotide sequence