Strain Fitness in Pseudomonas simiae WCS417 around PS417_16805

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16800 and PS417_16805 are separated by 123 nucleotidesPS417_16805 and PS417_16810 overlap by 1 nucleotidesPS417_16810 and PS417_16815 are separated by 11 nucleotides PS417_16800: PS417_16800 - acyl-CoA synthetase, at 3,664,724 to 3,665,626 _16800 PS417_16805: PS417_16805 - 5,10-methylene tetrahydromethanopterin reductase, at 3,665,750 to 3,667,129 _16805 PS417_16810: PS417_16810 - acyl-CoA dehydrogenase, at 3,667,129 to 3,667,455 _16810 PS417_16815: PS417_16815 - acyl-CoA dehydrogenase, at 3,667,467 to 3,668,663 _16815 Position (kb) 3665 3666 3667 3668Strain fitness (log2 ratio) -2 -1 0 1at 3664.794 kb on + strandat 3664.794 kb on + strandat 3664.795 kb on - strandat 3664.795 kb on - strandat 3664.795 kb on - strandat 3665.241 kb on + strand, within PS417_16800at 3665.241 kb on + strand, within PS417_16800at 3665.241 kb on + strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.242 kb on - strand, within PS417_16800at 3665.692 kb on + strandat 3665.692 kb on + strandat 3665.692 kb on + strandat 3665.693 kb on - strandat 3665.693 kb on - strandat 3665.778 kb on + strandat 3665.854 kb on - strandat 3665.943 kb on - strand, within PS417_16805at 3665.943 kb on - strand, within PS417_16805at 3666.225 kb on + strand, within PS417_16805at 3666.398 kb on + strand, within PS417_16805at 3666.624 kb on + strand, within PS417_16805at 3666.625 kb on - strand, within PS417_16805at 3666.639 kb on + strand, within PS417_16805at 3666.934 kb on - strand, within PS417_16805at 3666.942 kb on + strand, within PS417_16805at 3666.943 kb on - strand, within PS417_16805at 3667.032 kb on + strandat 3667.151 kb on + strandat 3667.151 kb on + strandat 3667.151 kb on + strandat 3667.152 kb on - strandat 3667.382 kb on + strand, within PS417_16810at 3667.383 kb on - strand, within PS417_16810at 3667.468 kb on + strandat 3667.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,664,794 + -0.3
3,664,794 + -0.6
3,664,795 - -0.2
3,664,795 - +0.1
3,664,795 - +0.1
3,665,241 + PS417_16800 0.57 -1.1
3,665,241 + PS417_16800 0.57 -0.1
3,665,241 + PS417_16800 0.57 -0.3
3,665,242 - PS417_16800 0.57 -0.2
3,665,242 - PS417_16800 0.57 -0.5
3,665,242 - PS417_16800 0.57 -0.2
3,665,242 - PS417_16800 0.57 +0.1
3,665,242 - PS417_16800 0.57 -1.3
3,665,242 - PS417_16800 0.57 -0.1
3,665,692 + -1.3
3,665,692 + +0.1
3,665,692 + -0.9
3,665,693 - -0.4
3,665,693 - -1.9
3,665,778 + +1.6
3,665,854 - -0.2
3,665,943 - PS417_16805 0.14 -0.2
3,665,943 - PS417_16805 0.14 +1.6
3,666,225 + PS417_16805 0.34 +0.0
3,666,398 + PS417_16805 0.47 -0.3
3,666,624 + PS417_16805 0.63 +0.8
3,666,625 - PS417_16805 0.63 +0.8
3,666,639 + PS417_16805 0.64 -0.9
3,666,934 - PS417_16805 0.86 +0.3
3,666,942 + PS417_16805 0.86 +0.3
3,666,943 - PS417_16805 0.86 +1.0
3,667,032 + -1.0
3,667,151 + +0.5
3,667,151 + +0.8
3,667,151 + -0.2
3,667,152 - -0.3
3,667,382 + PS417_16810 0.77 -0.5
3,667,383 - PS417_16810 0.78 +0.1
3,667,468 + -0.2
3,667,468 + -1.4

Or see this region's nucleotide sequence