Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11550 and PS417_11555 overlap by 4 nucleotides PS417_11555 and PS417_11560 overlap by 4 nucleotides PS417_11560 and PS417_11565 overlap by 1 nucleotides
PS417_11550: PS417_11550 - FAD-binding oxidoreductase, at 2,483,144 to 2,484,241
_11550
PS417_11555: PS417_11555 - (2Fe-2S)-binding protein, at 2,484,238 to 2,485,581
_11555
PS417_11560: PS417_11560 - ferredoxin, at 2,485,578 to 2,485,868
_11560
PS417_11565: PS417_11565 - ABC transporter permease, at 2,485,868 to 2,486,662
_11565
Position (kb)
2484
2485
2486 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2483.511 kb on + strand, within PS417_11550 at 2483.511 kb on + strand, within PS417_11550 at 2483.599 kb on + strand, within PS417_11550 at 2484.003 kb on + strand, within PS417_11550 at 2484.071 kb on + strand at 2484.071 kb on + strand, within PS417_11550 at 2484.072 kb on - strand, within PS417_11550 at 2484.111 kb on + strand, within PS417_11550 at 2484.224 kb on + strand at 2484.708 kb on - strand, within PS417_11555 at 2484.968 kb on + strand, within PS417_11555 at 2484.969 kb on - strand, within PS417_11555 at 2485.100 kb on + strand, within PS417_11555 at 2485.190 kb on + strand, within PS417_11555 at 2485.415 kb on + strand, within PS417_11555 at 2485.887 kb on - strand at 2485.995 kb on + strand, within PS417_11565 at 2485.996 kb on - strand, within PS417_11565 at 2486.001 kb on + strand, within PS417_11565 at 2486.001 kb on + strand, within PS417_11565 at 2486.001 kb on + strand, within PS417_11565 at 2486.001 kb on + strand at 2486.001 kb on + strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.002 kb on - strand, within PS417_11565 at 2486.198 kb on - strand, within PS417_11565 at 2486.475 kb on + strand, within PS417_11565 at 2486.476 kb on - strand, within PS417_11565
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,483,511 + PS417_11550 0.33 -0.0 2,483,511 + PS417_11550 0.33 -0.8 2,483,599 + PS417_11550 0.41 -0.2 2,484,003 + PS417_11550 0.78 +0.0 2,484,071 + +1.9 2,484,071 + PS417_11550 0.84 -0.0 2,484,072 - PS417_11550 0.85 -0.5 2,484,111 + PS417_11550 0.88 +0.6 2,484,224 + +0.1 2,484,708 - PS417_11555 0.35 +0.7 2,484,968 + PS417_11555 0.54 +1.5 2,484,969 - PS417_11555 0.54 +0.9 2,485,100 + PS417_11555 0.64 -0.5 2,485,190 + PS417_11555 0.71 +2.1 2,485,415 + PS417_11555 0.88 +0.0 2,485,887 - +1.0 2,485,995 + PS417_11565 0.16 -0.0 2,485,996 - PS417_11565 0.16 +0.4 2,486,001 + PS417_11565 0.17 -0.3 2,486,001 + PS417_11565 0.17 -0.8 2,486,001 + PS417_11565 0.17 +0.4 2,486,001 + -0.5 2,486,001 + PS417_11565 0.17 +0.5 2,486,002 - PS417_11565 0.17 -0.5 2,486,002 - PS417_11565 0.17 +0.1 2,486,002 - PS417_11565 0.17 +0.2 2,486,002 - PS417_11565 0.17 -0.3 2,486,002 - PS417_11565 0.17 -0.8 2,486,002 - PS417_11565 0.17 -0.5 2,486,002 - PS417_11565 0.17 -3.0 2,486,198 - PS417_11565 0.42 +0.1 2,486,475 + PS417_11565 0.76 +0.3 2,486,476 - PS417_11565 0.76 -0.2
Or see this region's nucleotide sequence