Strain Fitness in Pseudomonas simiae WCS417 around PS417_11555

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_11550 and PS417_11555 overlap by 4 nucleotidesPS417_11555 and PS417_11560 overlap by 4 nucleotidesPS417_11560 and PS417_11565 overlap by 1 nucleotides PS417_11550: PS417_11550 - FAD-binding oxidoreductase, at 2,483,144 to 2,484,241 _11550 PS417_11555: PS417_11555 - (2Fe-2S)-binding protein, at 2,484,238 to 2,485,581 _11555 PS417_11560: PS417_11560 - ferredoxin, at 2,485,578 to 2,485,868 _11560 PS417_11565: PS417_11565 - ABC transporter permease, at 2,485,868 to 2,486,662 _11565 Position (kb) 2484 2485 2486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2483.511 kb on + strand, within PS417_11550at 2483.511 kb on + strand, within PS417_11550at 2483.599 kb on + strand, within PS417_11550at 2484.003 kb on + strand, within PS417_11550at 2484.071 kb on + strandat 2484.071 kb on + strand, within PS417_11550at 2484.072 kb on - strand, within PS417_11550at 2484.111 kb on + strand, within PS417_11550at 2484.224 kb on + strandat 2484.708 kb on - strand, within PS417_11555at 2484.968 kb on + strand, within PS417_11555at 2484.969 kb on - strand, within PS417_11555at 2485.100 kb on + strand, within PS417_11555at 2485.190 kb on + strand, within PS417_11555at 2485.415 kb on + strand, within PS417_11555at 2485.887 kb on - strandat 2485.995 kb on + strand, within PS417_11565at 2485.996 kb on - strand, within PS417_11565at 2486.001 kb on + strand, within PS417_11565at 2486.001 kb on + strand, within PS417_11565at 2486.001 kb on + strand, within PS417_11565at 2486.001 kb on + strandat 2486.001 kb on + strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.002 kb on - strand, within PS417_11565at 2486.198 kb on - strand, within PS417_11565at 2486.475 kb on + strand, within PS417_11565at 2486.476 kb on - strand, within PS417_11565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
2,483,511 + PS417_11550 0.33 -0.0
2,483,511 + PS417_11550 0.33 -0.8
2,483,599 + PS417_11550 0.41 -0.2
2,484,003 + PS417_11550 0.78 +0.0
2,484,071 + +1.9
2,484,071 + PS417_11550 0.84 -0.0
2,484,072 - PS417_11550 0.85 -0.5
2,484,111 + PS417_11550 0.88 +0.6
2,484,224 + +0.1
2,484,708 - PS417_11555 0.35 +0.7
2,484,968 + PS417_11555 0.54 +1.5
2,484,969 - PS417_11555 0.54 +0.9
2,485,100 + PS417_11555 0.64 -0.5
2,485,190 + PS417_11555 0.71 +2.1
2,485,415 + PS417_11555 0.88 +0.0
2,485,887 - +1.0
2,485,995 + PS417_11565 0.16 -0.0
2,485,996 - PS417_11565 0.16 +0.4
2,486,001 + PS417_11565 0.17 -0.3
2,486,001 + PS417_11565 0.17 -0.8
2,486,001 + PS417_11565 0.17 +0.4
2,486,001 + -0.5
2,486,001 + PS417_11565 0.17 +0.5
2,486,002 - PS417_11565 0.17 -0.5
2,486,002 - PS417_11565 0.17 +0.1
2,486,002 - PS417_11565 0.17 +0.2
2,486,002 - PS417_11565 0.17 -0.3
2,486,002 - PS417_11565 0.17 -0.8
2,486,002 - PS417_11565 0.17 -0.5
2,486,002 - PS417_11565 0.17 -3.0
2,486,198 - PS417_11565 0.42 +0.1
2,486,475 + PS417_11565 0.76 +0.3
2,486,476 - PS417_11565 0.76 -0.2

Or see this region's nucleotide sequence