Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17360 and PS417_17365 are separated by 3 nucleotides PS417_17365 and PS417_17370 are separated by 51 nucleotides
PS417_17360: PS417_17360 - D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) , at 3,792,587 to 3,793,411
_17360
PS417_17365: PS417_17365 - galactaro-1,5-lactonase (from data) , at 3,793,415 to 3,794,290
_17365
PS417_17370: PS417_17370 - C4-dicarboxylate ABC transporter, at 3,794,342 to 3,795,304
_17370
Position (kb)
3793
3794
3795 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3792.460 kb on - strand at 3792.541 kb on - strand at 3792.893 kb on - strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.897 kb on - strand, within PS417_17360 at 3792.897 kb on - strand, within PS417_17360 at 3792.966 kb on - strand, within PS417_17360 at 3792.966 kb on - strand at 3792.966 kb on - strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.017 kb on - strand, within PS417_17360 at 3793.073 kb on + strand, within PS417_17360 at 3793.194 kb on - strand, within PS417_17360 at 3793.223 kb on + strand, within PS417_17360 at 3793.901 kb on + strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.288 kb on + strand at 3794.312 kb on - strand at 3794.320 kb on - strand at 3794.787 kb on - strand, within PS417_17370 at 3794.842 kb on - strand, within PS417_17370 at 3795.005 kb on + strand, within PS417_17370 at 3795.006 kb on - strand, within PS417_17370 at 3795.008 kb on + strand, within PS417_17370 at 3795.009 kb on - strand, within PS417_17370 at 3795.224 kb on + strand at 3795.224 kb on + strand at 3795.224 kb on + strand at 3795.225 kb on - strand at 3795.225 kb on - strand at 3795.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,792,460 - -0.8 3,792,541 - -0.1 3,792,893 - PS417_17360 0.37 -0.3 3,792,896 + PS417_17360 0.37 -2.5 3,792,896 + PS417_17360 0.37 -0.1 3,792,896 + PS417_17360 0.37 +0.3 3,792,897 - PS417_17360 0.38 -1.5 3,792,897 - PS417_17360 0.38 -1.1 3,792,966 - PS417_17360 0.46 +0.4 3,792,966 - -0.5 3,792,966 - PS417_17360 0.46 +1.0 3,793,016 + PS417_17360 0.52 +0.3 3,793,016 + PS417_17360 0.52 +0.3 3,793,016 + PS417_17360 0.52 -0.6 3,793,016 + PS417_17360 0.52 +0.7 3,793,017 - PS417_17360 0.52 -0.1 3,793,073 + PS417_17360 0.59 +0.1 3,793,194 - PS417_17360 0.74 -0.9 3,793,223 + PS417_17360 0.77 -0.2 3,793,901 + PS417_17365 0.55 +0.5 3,793,902 - PS417_17365 0.56 +0.6 3,793,902 - PS417_17365 0.56 +1.6 3,793,902 - PS417_17365 0.56 +0.4 3,794,127 + PS417_17365 0.81 +0.5 3,794,127 + PS417_17365 0.81 -0.1 3,794,288 + +0.2 3,794,312 - -1.4 3,794,320 - -0.9 3,794,787 - PS417_17370 0.46 -0.6 3,794,842 - PS417_17370 0.52 +0.2 3,795,005 + PS417_17370 0.69 +0.3 3,795,006 - PS417_17370 0.69 +1.7 3,795,008 + PS417_17370 0.69 -0.2 3,795,009 - PS417_17370 0.69 +0.1 3,795,224 + +2.9 3,795,224 + -0.3 3,795,224 + -1.4 3,795,225 - +1.1 3,795,225 - +0.1 3,795,225 - -0.2
Or see this region's nucleotide sequence