Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03545 and PS417_03550 are separated by 6 nucleotides PS417_03550 and PS417_03555 are separated by 473 nucleotides PS417_03555 and PS417_03560 are separated by 392 nucleotides
PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489
_03545
PS417_03550: PS417_03550 - hypothetical protein, at 809,496 to 809,858
_03550
PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258
_03555
PS417_03560: PS417_03560 - GTP-binding protein, at 811,651 to 812,751
_03560
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.339 kb on + strand, within PS417_03545 at 809.374 kb on - strand, within PS417_03545 at 809.376 kb on + strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.429 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.655 kb on - strand, within PS417_03550 at 809.673 kb on + strand, within PS417_03550 at 809.717 kb on + strand, within PS417_03550 at 809.718 kb on - strand, within PS417_03550 at 809.828 kb on + strand at 809.829 kb on - strand at 810.029 kb on + strand at 810.168 kb on - strand at 810.168 kb on - strand at 810.187 kb on - strand at 810.192 kb on + strand at 810.294 kb on + strand at 810.294 kb on + strand at 810.295 kb on - strand at 810.295 kb on - strand at 810.311 kb on - strand at 810.424 kb on + strand at 810.494 kb on + strand, within PS417_03555 at 810.495 kb on - strand, within PS417_03555 at 810.542 kb on + strand, within PS417_03555 at 810.543 kb on - strand, within PS417_03555 at 810.688 kb on + strand, within PS417_03555 at 810.757 kb on - strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.906 kb on - strand at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.105 kb on + strand, within PS417_03555 at 811.106 kb on - strand, within PS417_03555 at 811.120 kb on + strand, within PS417_03555 at 811.121 kb on - strand, within PS417_03555 at 811.161 kb on - strand, within PS417_03555 at 811.298 kb on - strand at 811.437 kb on + strand at 811.922 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 809,339 + PS417_03545 0.82 +0.1 809,374 - PS417_03545 0.86 -0.9 809,376 + PS417_03545 0.86 +0.5 809,401 - PS417_03545 0.89 -0.4 809,401 - PS417_03545 0.89 +0.4 809,429 + +0.5 809,457 + +0.7 809,457 + +0.8 809,457 + -2.1 809,458 - -1.1 809,458 - -2.3 809,458 - +0.1 809,655 - PS417_03550 0.44 -0.7 809,673 + PS417_03550 0.49 -3.0 809,717 + PS417_03550 0.61 +1.3 809,718 - PS417_03550 0.61 +1.0 809,828 + -1.6 809,829 - +1.0 810,029 + -1.3 810,168 - +1.3 810,168 - +0.6 810,187 - -0.7 810,192 + +0.3 810,294 + +0.6 810,294 + -0.2 810,295 - +0.4 810,295 - -0.7 810,311 - -1.1 810,424 + +0.5 810,494 + PS417_03555 0.17 +0.9 810,495 - PS417_03555 0.18 -1.3 810,542 + PS417_03555 0.23 +1.7 810,543 - PS417_03555 0.23 +0.7 810,688 + PS417_03555 0.38 +0.7 810,757 - PS417_03555 0.46 -0.9 810,905 + PS417_03555 0.62 -0.9 810,905 + PS417_03555 0.62 -1.0 810,906 - -0.4 810,939 + PS417_03555 0.65 +0.7 810,939 + PS417_03555 0.65 +0.5 810,939 + PS417_03555 0.65 -0.7 810,940 - PS417_03555 0.66 -0.0 810,940 - PS417_03555 0.66 +0.5 810,940 - PS417_03555 0.66 +0.1 810,940 - PS417_03555 0.66 -0.6 810,942 - PS417_03555 0.66 +0.4 810,942 - PS417_03555 0.66 +0.3 810,942 - PS417_03555 0.66 -2.8 811,099 - PS417_03555 0.83 -1.8 811,099 - PS417_03555 0.83 -0.0 811,105 + PS417_03555 0.83 +1.4 811,106 - PS417_03555 0.83 +1.4 811,120 + PS417_03555 0.85 +0.8 811,121 - PS417_03555 0.85 +1.1 811,161 - PS417_03555 0.89 +0.2 811,298 - -2.1 811,437 + +1.9 811,922 + PS417_03560 0.25 +0.1 812,135 + PS417_03560 0.44 -1.1 812,135 + PS417_03560 0.44 -2.0 812,135 + PS417_03560 0.44 -0.3
Or see this region's nucleotide sequence