Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27905 and PS417_27910 overlap by 4 nucleotides PS417_27910 and PS417_27915 are separated by 0 nucleotides PS417_27915 and PS417_27920 overlap by 4 nucleotides
PS417_27905: PS417_27905 - serine/threonine protein kinase, at 6,015,683 to 6,018,637
_27905
PS417_27910: PS417_27910 - PppA, at 6,018,634 to 6,019,353
_27910
PS417_27915: PS417_27915 - type VI secretion system protein ImpM, at 6,019,354 to 6,020,007
_27915
PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504
_27920
Position (kb)
6018
6019
6020 Strain fitness (log2 ratio)
-2
-1
0
1 at 6017.870 kb on + strand, within PS417_27905 at 6018.022 kb on - strand, within PS417_27905 at 6018.048 kb on + strand, within PS417_27905 at 6018.121 kb on + strand, within PS417_27905 at 6018.122 kb on - strand, within PS417_27905 at 6018.123 kb on + strand, within PS417_27905 at 6018.124 kb on - strand, within PS417_27905 at 6018.124 kb on - strand, within PS417_27905 at 6018.260 kb on + strand, within PS417_27905 at 6018.261 kb on - strand, within PS417_27905 at 6018.282 kb on + strand, within PS417_27905 at 6018.283 kb on - strand, within PS417_27905 at 6018.378 kb on + strand at 6018.379 kb on - strand at 6018.393 kb on + strand at 6018.393 kb on + strand at 6018.393 kb on + strand at 6018.394 kb on - strand at 6018.394 kb on - strand at 6018.394 kb on - strand at 6018.643 kb on + strand at 6018.644 kb on - strand at 6018.644 kb on - strand at 6018.848 kb on + strand, within PS417_27910 at 6018.948 kb on - strand, within PS417_27910 at 6019.078 kb on + strand, within PS417_27910 at 6019.151 kb on + strand, within PS417_27910 at 6019.215 kb on - strand, within PS417_27910 at 6019.215 kb on - strand, within PS417_27910 at 6019.340 kb on + strand at 6019.341 kb on - strand at 6019.355 kb on + strand at 6019.355 kb on + strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.356 kb on - strand at 6019.440 kb on + strand, within PS417_27915 at 6019.441 kb on - strand, within PS417_27915 at 6019.507 kb on - strand, within PS417_27915 at 6019.693 kb on + strand, within PS417_27915 at 6019.694 kb on - strand, within PS417_27915 at 6019.853 kb on + strand, within PS417_27915 at 6019.854 kb on - strand, within PS417_27915 at 6019.989 kb on - strand at 6020.240 kb on + strand at 6020.241 kb on - strand at 6020.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 6,017,870 + PS417_27905 0.74 -1.7 6,018,022 - PS417_27905 0.79 -0.2 6,018,048 + PS417_27905 0.80 -2.5 6,018,121 + PS417_27905 0.83 +1.2 6,018,122 - PS417_27905 0.83 +1.0 6,018,123 + PS417_27905 0.83 +1.2 6,018,124 - PS417_27905 0.83 -0.2 6,018,124 - PS417_27905 0.83 -0.2 6,018,260 + PS417_27905 0.87 -0.9 6,018,261 - PS417_27905 0.87 +1.2 6,018,282 + PS417_27905 0.88 +0.4 6,018,283 - PS417_27905 0.88 +0.0 6,018,378 + +0.1 6,018,379 - -1.4 6,018,393 + -0.7 6,018,393 + -0.1 6,018,393 + +0.4 6,018,394 - -0.2 6,018,394 - -0.1 6,018,394 - +0.8 6,018,643 + -0.2 6,018,644 - +0.4 6,018,644 - +0.9 6,018,848 + PS417_27910 0.30 -1.1 6,018,948 - PS417_27910 0.44 -0.5 6,019,078 + PS417_27910 0.62 -1.1 6,019,151 + PS417_27910 0.72 -0.9 6,019,215 - PS417_27910 0.81 -1.1 6,019,215 - PS417_27910 0.81 +0.0 6,019,340 + +0.4 6,019,341 - +0.4 6,019,355 + +0.2 6,019,355 + +0.6 6,019,356 - -1.4 6,019,356 - +0.0 6,019,356 - +0.3 6,019,356 - -0.6 6,019,440 + PS417_27915 0.13 +0.1 6,019,441 - PS417_27915 0.13 -0.7 6,019,507 - PS417_27915 0.23 -0.4 6,019,693 + PS417_27915 0.52 -1.6 6,019,694 - PS417_27915 0.52 +0.4 6,019,853 + PS417_27915 0.76 -0.4 6,019,854 - PS417_27915 0.76 -1.4 6,019,989 - -2.1 6,020,240 + -1.2 6,020,241 - +0.1 6,020,309 - +1.1
Or see this region's nucleotide sequence