Strain Fitness in Pseudomonas simiae WCS417 around PS417_27910

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27905 and PS417_27910 overlap by 4 nucleotidesPS417_27910 and PS417_27915 are separated by 0 nucleotidesPS417_27915 and PS417_27920 overlap by 4 nucleotides PS417_27905: PS417_27905 - serine/threonine protein kinase, at 6,015,683 to 6,018,637 _27905 PS417_27910: PS417_27910 - PppA, at 6,018,634 to 6,019,353 _27910 PS417_27915: PS417_27915 - type VI secretion system protein ImpM, at 6,019,354 to 6,020,007 _27915 PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504 _27920 Position (kb) 6018 6019 6020Strain fitness (log2 ratio) -2 -1 0 1at 6017.870 kb on + strand, within PS417_27905at 6018.022 kb on - strand, within PS417_27905at 6018.048 kb on + strand, within PS417_27905at 6018.121 kb on + strand, within PS417_27905at 6018.122 kb on - strand, within PS417_27905at 6018.123 kb on + strand, within PS417_27905at 6018.124 kb on - strand, within PS417_27905at 6018.124 kb on - strand, within PS417_27905at 6018.260 kb on + strand, within PS417_27905at 6018.261 kb on - strand, within PS417_27905at 6018.282 kb on + strand, within PS417_27905at 6018.283 kb on - strand, within PS417_27905at 6018.378 kb on + strandat 6018.379 kb on - strandat 6018.393 kb on + strandat 6018.393 kb on + strandat 6018.393 kb on + strandat 6018.394 kb on - strandat 6018.394 kb on - strandat 6018.394 kb on - strandat 6018.643 kb on + strandat 6018.644 kb on - strandat 6018.644 kb on - strandat 6018.848 kb on + strand, within PS417_27910at 6018.948 kb on - strand, within PS417_27910at 6019.078 kb on + strand, within PS417_27910at 6019.151 kb on + strand, within PS417_27910at 6019.215 kb on - strand, within PS417_27910at 6019.215 kb on - strand, within PS417_27910at 6019.340 kb on + strandat 6019.341 kb on - strandat 6019.355 kb on + strandat 6019.355 kb on + strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.356 kb on - strandat 6019.440 kb on + strand, within PS417_27915at 6019.441 kb on - strand, within PS417_27915at 6019.507 kb on - strand, within PS417_27915at 6019.693 kb on + strand, within PS417_27915at 6019.694 kb on - strand, within PS417_27915at 6019.853 kb on + strand, within PS417_27915at 6019.854 kb on - strand, within PS417_27915at 6019.989 kb on - strandat 6020.240 kb on + strandat 6020.241 kb on - strandat 6020.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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6,017,870 + PS417_27905 0.74 -1.7
6,018,022 - PS417_27905 0.79 -0.2
6,018,048 + PS417_27905 0.80 -2.5
6,018,121 + PS417_27905 0.83 +1.2
6,018,122 - PS417_27905 0.83 +1.0
6,018,123 + PS417_27905 0.83 +1.2
6,018,124 - PS417_27905 0.83 -0.2
6,018,124 - PS417_27905 0.83 -0.2
6,018,260 + PS417_27905 0.87 -0.9
6,018,261 - PS417_27905 0.87 +1.2
6,018,282 + PS417_27905 0.88 +0.4
6,018,283 - PS417_27905 0.88 +0.0
6,018,378 + +0.1
6,018,379 - -1.4
6,018,393 + -0.7
6,018,393 + -0.1
6,018,393 + +0.4
6,018,394 - -0.2
6,018,394 - -0.1
6,018,394 - +0.8
6,018,643 + -0.2
6,018,644 - +0.4
6,018,644 - +0.9
6,018,848 + PS417_27910 0.30 -1.1
6,018,948 - PS417_27910 0.44 -0.5
6,019,078 + PS417_27910 0.62 -1.1
6,019,151 + PS417_27910 0.72 -0.9
6,019,215 - PS417_27910 0.81 -1.1
6,019,215 - PS417_27910 0.81 +0.0
6,019,340 + +0.4
6,019,341 - +0.4
6,019,355 + +0.2
6,019,355 + +0.6
6,019,356 - -1.4
6,019,356 - +0.0
6,019,356 - +0.3
6,019,356 - -0.6
6,019,440 + PS417_27915 0.13 +0.1
6,019,441 - PS417_27915 0.13 -0.7
6,019,507 - PS417_27915 0.23 -0.4
6,019,693 + PS417_27915 0.52 -1.6
6,019,694 - PS417_27915 0.52 +0.4
6,019,853 + PS417_27915 0.76 -0.4
6,019,854 - PS417_27915 0.76 -1.4
6,019,989 - -2.1
6,020,240 + -1.2
6,020,241 - +0.1
6,020,309 - +1.1

Or see this region's nucleotide sequence