Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02605 and PS417_02610 are separated by 157 nucleotides PS417_02610 and PS417_02615 overlap by 1 nucleotides PS417_02615 and PS417_02620 are separated by 46 nucleotides
PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599
_02605
PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243
_02610
PS417_02615: PS417_02615 - transglutaminase, at 599,243 to 600,133
_02615
PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362
_02620
Position (kb) 596
597
598
599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 596.119 kb on - strand, within PS417_02605 at 596.156 kb on + strand, within PS417_02605 at 596.607 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.724 kb on - strand at 596.724 kb on - strand at 596.799 kb on + strand at 596.799 kb on + strand at 596.800 kb on - strand at 596.800 kb on - strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.950 kb on - strand at 596.950 kb on - strand at 597.146 kb on + strand, within PS417_02610 at 597.147 kb on - strand, within PS417_02610 at 597.443 kb on + strand, within PS417_02610 at 597.484 kb on - strand, within PS417_02610 at 597.959 kb on + strand, within PS417_02610 at 597.960 kb on - strand, within PS417_02610 at 597.960 kb on - strand, within PS417_02610 at 597.981 kb on + strand, within PS417_02610 at 597.982 kb on - strand, within PS417_02610 at 598.075 kb on - strand, within PS417_02610 at 598.278 kb on + strand, within PS417_02610 at 598.279 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.378 kb on - strand, within PS417_02610 at 598.715 kb on + strand, within PS417_02610 at 598.875 kb on + strand at 599.285 kb on + strand at 599.286 kb on - strand at 599.286 kb on - strand at 599.428 kb on + strand at 599.497 kb on - strand, within PS417_02615 at 599.579 kb on - strand, within PS417_02615 at 599.628 kb on - strand, within PS417_02615 at 599.704 kb on - strand, within PS417_02615 at 599.867 kb on + strand, within PS417_02615 at 599.867 kb on + strand at 599.868 kb on - strand, within PS417_02615 at 599.868 kb on - strand, within PS417_02615 at 599.869 kb on + strand, within PS417_02615 at 599.870 kb on - strand, within PS417_02615 at 600.072 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 596,119 - PS417_02605 0.85 +0.3 596,156 + PS417_02605 0.87 -0.8 596,607 + +0.5 596,659 + -0.5 596,659 + -3.0 596,659 + +0.8 596,659 + -2.0 596,659 + -1.7 596,660 - -2.1 596,660 - -2.1 596,703 + +2.2 596,703 + +0.6 596,703 + +0.1 596,703 + +0.7 596,703 + +0.9 596,703 + -0.1 596,704 - +1.0 596,704 - +1.1 596,724 - -1.1 596,724 - -3.7 596,799 + -0.3 596,799 + -0.3 596,800 - +1.0 596,800 - -2.5 596,940 + +0.3 596,940 + -0.7 596,940 + -1.2 596,941 - -1.8 596,941 - -2.3 596,941 - +0.0 596,950 - +0.2 596,950 - +0.9 597,146 + PS417_02610 0.16 +2.5 597,147 - PS417_02610 0.16 -2.2 597,443 + PS417_02610 0.28 -2.2 597,484 - PS417_02610 0.29 -0.5 597,959 + PS417_02610 0.48 -0.6 597,960 - PS417_02610 0.48 -1.5 597,960 - PS417_02610 0.48 -2.5 597,981 + PS417_02610 0.49 -0.8 597,982 - PS417_02610 0.49 -1.2 598,075 - PS417_02610 0.53 -1.0 598,278 + PS417_02610 0.61 +0.2 598,279 - PS417_02610 0.61 -0.2 598,283 - PS417_02610 0.61 -0.9 598,283 - PS417_02610 0.61 -2.0 598,283 - PS417_02610 0.61 +2.0 598,378 - PS417_02610 0.65 +1.0 598,715 + PS417_02610 0.79 +0.5 598,875 + +0.7 599,285 + -0.2 599,286 - -0.4 599,286 - +3.5 599,428 + +0.7 599,497 - PS417_02615 0.29 -0.4 599,579 - PS417_02615 0.38 -3.2 599,628 - PS417_02615 0.43 -3.5 599,704 - PS417_02615 0.52 +0.9 599,867 + PS417_02615 0.70 -0.3 599,867 + +0.9 599,868 - PS417_02615 0.70 -0.0 599,868 - PS417_02615 0.70 -0.2 599,869 + PS417_02615 0.70 -1.0 599,870 - PS417_02615 0.70 -2.8 600,072 + +0.7
Or see this region's nucleotide sequence