Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02595 and PS417_02600 overlap by 4 nucleotides PS417_02600 and PS417_02605 are separated by 187 nucleotides PS417_02605 and PS417_02610 are separated by 157 nucleotides
PS417_02595: PS417_02595 - NAD synthetase, at 591,743 to 592,675
_02595
PS417_02600: PS417_02600 - hypothetical protein, at 592,672 to 593,121
_02600
PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599
_02605
PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243
_02610
Position (kb) 593
594
595
596
597 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 592.454 kb on - strand, within PS417_02595 at 592.486 kb on - strand, within PS417_02595 at 592.609 kb on + strand at 592.609 kb on + strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.610 kb on - strand at 592.623 kb on + strand at 592.624 kb on - strand at 592.624 kb on - strand at 592.655 kb on + strand at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand, within PS417_02600 at 592.789 kb on + strand at 592.825 kb on + strand, within PS417_02600 at 592.826 kb on - strand, within PS417_02600 at 592.842 kb on - strand, within PS417_02600 at 592.847 kb on + strand, within PS417_02600 at 592.925 kb on - strand, within PS417_02600 at 593.075 kb on + strand, within PS417_02600 at 593.127 kb on + strand at 593.190 kb on + strand at 593.214 kb on + strand at 593.215 kb on - strand at 593.229 kb on + strand at 593.261 kb on + strand at 593.262 kb on - strand at 593.345 kb on + strand at 593.352 kb on - strand at 593.492 kb on + strand at 593.492 kb on + strand at 593.532 kb on + strand at 593.532 kb on + strand at 593.533 kb on - strand at 593.533 kb on - strand at 593.625 kb on - strand at 593.696 kb on + strand, within PS417_02605 at 593.710 kb on - strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.011 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.078 kb on + strand, within PS417_02605 at 594.209 kb on + strand, within PS417_02605 at 594.283 kb on - strand, within PS417_02605 at 594.283 kb on - strand, within PS417_02605 at 594.665 kb on + strand, within PS417_02605 at 594.665 kb on + strand, within PS417_02605 at 594.848 kb on + strand, within PS417_02605 at 594.849 kb on - strand, within PS417_02605 at 594.970 kb on + strand, within PS417_02605 at 594.970 kb on + strand, within PS417_02605 at 595.121 kb on + strand, within PS417_02605 at 595.122 kb on - strand, within PS417_02605 at 595.122 kb on - strand at 595.157 kb on + strand, within PS417_02605 at 595.158 kb on - strand, within PS417_02605 at 595.227 kb on - strand, within PS417_02605 at 595.508 kb on + strand, within PS417_02605 at 595.610 kb on + strand, within PS417_02605 at 595.610 kb on + strand, within PS417_02605 at 596.119 kb on - strand, within PS417_02605 at 596.156 kb on + strand, within PS417_02605 at 596.607 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.724 kb on - strand at 596.724 kb on - strand at 596.799 kb on + strand at 596.799 kb on + strand at 596.800 kb on - strand at 596.800 kb on - strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.950 kb on - strand at 596.950 kb on - strand at 597.146 kb on + strand, within PS417_02610 at 597.147 kb on - strand, within PS417_02610 at 597.443 kb on + strand, within PS417_02610 at 597.484 kb on - strand, within PS417_02610
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 592,454 - PS417_02595 0.76 +0.0 592,486 - PS417_02595 0.80 -0.6 592,609 + +0.1 592,609 + -0.6 592,610 - -2.5 592,610 - +2.1 592,610 - -0.1 592,623 + -0.2 592,624 - -0.8 592,624 - -1.3 592,655 + +1.7 592,789 + PS417_02600 0.26 -0.0 592,789 + PS417_02600 0.26 +1.2 592,789 + +0.6 592,825 + PS417_02600 0.34 -0.6 592,826 - PS417_02600 0.34 -1.2 592,842 - PS417_02600 0.38 -0.8 592,847 + PS417_02600 0.39 +0.9 592,925 - PS417_02600 0.56 +0.3 593,075 + PS417_02600 0.90 +1.6 593,127 + +0.5 593,190 + -0.5 593,214 + +3.1 593,215 - -0.7 593,229 + +0.2 593,261 + +0.9 593,262 - +0.3 593,345 + +1.8 593,352 - +1.0 593,492 + +0.4 593,492 + +0.1 593,532 + -0.7 593,532 + +0.0 593,533 - +0.3 593,533 - +0.8 593,625 - +0.2 593,696 + PS417_02605 0.12 -0.5 593,710 - PS417_02605 0.12 -1.6 594,011 + PS417_02605 0.21 +0.6 594,011 + PS417_02605 0.21 +1.5 594,011 + PS417_02605 0.21 -1.4 594,078 + PS417_02605 0.23 +0.6 594,078 + PS417_02605 0.23 -0.9 594,078 + PS417_02605 0.23 -0.7 594,078 + PS417_02605 0.23 -0.3 594,209 + PS417_02605 0.27 +0.6 594,283 - PS417_02605 0.30 -0.2 594,283 - PS417_02605 0.30 +0.0 594,665 + PS417_02605 0.41 -0.5 594,665 + PS417_02605 0.41 -0.0 594,848 + PS417_02605 0.47 -0.9 594,849 - PS417_02605 0.47 -0.3 594,970 + PS417_02605 0.50 +0.4 594,970 + PS417_02605 0.50 -3.9 595,121 + PS417_02605 0.55 -1.8 595,122 - PS417_02605 0.55 -0.2 595,122 - +2.0 595,157 + PS417_02605 0.56 +0.1 595,158 - PS417_02605 0.56 -0.0 595,227 - PS417_02605 0.58 -0.6 595,508 + PS417_02605 0.67 -0.5 595,610 + PS417_02605 0.70 -0.4 595,610 + PS417_02605 0.70 -0.4 596,119 - PS417_02605 0.85 +0.3 596,156 + PS417_02605 0.87 -0.8 596,607 + +0.5 596,659 + -0.5 596,659 + -3.0 596,659 + +0.8 596,659 + -2.0 596,659 + -1.7 596,660 - -2.1 596,660 - -2.1 596,703 + +2.2 596,703 + +0.6 596,703 + +0.1 596,703 + +0.7 596,703 + +0.9 596,703 + -0.1 596,704 - +1.0 596,704 - +1.1 596,724 - -1.1 596,724 - -3.7 596,799 + -0.3 596,799 + -0.3 596,800 - +1.0 596,800 - -2.5 596,940 + +0.3 596,940 + -0.7 596,940 + -1.2 596,941 - -1.8 596,941 - -2.3 596,941 - +0.0 596,950 - +0.2 596,950 - +0.9 597,146 + PS417_02610 0.16 +2.5 597,147 - PS417_02610 0.16 -2.2 597,443 + PS417_02610 0.28 -2.2 597,484 - PS417_02610 0.29 -0.5
Or see this region's nucleotide sequence