Strain Fitness in Pseudomonas simiae WCS417 around PS417_20875

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20870 and PS417_20875 are separated by 259 nucleotidesPS417_20875 and PS417_20880 are separated by 2 nucleotidesPS417_20880 and PS417_20885 are separated by 280 nucleotides PS417_20870: PS417_20870 - cell division protein ZipA, at 4,533,661 to 4,534,524 _20870 PS417_20875: PS417_20875 - chromosome segregation protein SMC, at 4,534,784 to 4,538,272 _20875 PS417_20880: PS417_20880 - GntR family transcriptional regulator, at 4,538,275 to 4,538,934 _20880 PS417_20885: PS417_20885 - Xanthine dehydrogenase (EC 1.17.1.4) (from data), at 4,539,215 to 4,540,663 _20885 Position (kb) 4534 4535 4536 4537 4538 4539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4534.590 kb on - strandat 4534.710 kb on - strandat 4535.173 kb on - strand, within PS417_20875at 4535.224 kb on + strand, within PS417_20875at 4535.225 kb on - strand, within PS417_20875at 4535.344 kb on + strand, within PS417_20875at 4537.392 kb on + strand, within PS417_20875at 4537.392 kb on + strand, within PS417_20875at 4537.621 kb on - strand, within PS417_20875at 4537.755 kb on + strand, within PS417_20875at 4537.790 kb on - strand, within PS417_20875at 4537.790 kb on - strand, within PS417_20875at 4537.929 kb on + strandat 4537.929 kb on + strandat 4537.930 kb on - strandat 4537.930 kb on - strandat 4538.442 kb on - strand, within PS417_20880at 4538.666 kb on + strand, within PS417_20880at 4538.666 kb on + strand, within PS417_20880at 4538.962 kb on - strandat 4538.978 kb on - strandat 4539.090 kb on + strandat 4539.091 kb on - strandat 4539.165 kb on - strandat 4539.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,534,590 - +0.8
4,534,710 - +1.0
4,535,173 - PS417_20875 0.11 -1.2
4,535,224 + PS417_20875 0.13 -2.4
4,535,225 - PS417_20875 0.13 -0.9
4,535,344 + PS417_20875 0.16 -1.0
4,537,392 + PS417_20875 0.75 +1.9
4,537,392 + PS417_20875 0.75 +1.3
4,537,621 - PS417_20875 0.81 +1.6
4,537,755 + PS417_20875 0.85 -1.1
4,537,790 - PS417_20875 0.86 -2.2
4,537,790 - PS417_20875 0.86 -0.4
4,537,929 + -1.4
4,537,929 + -1.4
4,537,930 - +0.6
4,537,930 - -2.0
4,538,442 - PS417_20880 0.25 -1.5
4,538,666 + PS417_20880 0.59 -0.4
4,538,666 + PS417_20880 0.59 -0.4
4,538,962 - -2.8
4,538,978 - +0.6
4,539,090 + -0.4
4,539,091 - -0.0
4,539,165 - -0.9
4,539,193 + -3.2

Or see this region's nucleotide sequence