Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19815 and PS417_19820 are separated by 7 nucleotides PS417_19820 and PS417_19825 are separated by 110 nucleotides
PS417_19815: PS417_19815 - Fis family transcriptional regulator, at 4,301,716 to 4,303,092
_19815
PS417_19820: PS417_19820 - histidine kinase, at 4,303,100 to 4,304,311
_19820
PS417_19825: PS417_19825 - ATPase AAA, at 4,304,422 to 4,305,897
_19825
Position (kb)
4303
4304
4305 Strain fitness (log2 ratio)
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 4302.585 kb on - strand, within PS417_19815 at 4303.008 kb on - strand at 4303.092 kb on + strand at 4303.102 kb on - strand at 4303.256 kb on - strand, within PS417_19820 at 4303.347 kb on + strand, within PS417_19820 at 4303.348 kb on - strand, within PS417_19820 at 4303.588 kb on + strand, within PS417_19820 at 4303.692 kb on + strand, within PS417_19820 at 4303.692 kb on + strand, within PS417_19820 at 4303.693 kb on - strand, within PS417_19820 at 4303.693 kb on - strand, within PS417_19820 at 4303.693 kb on - strand, within PS417_19820 at 4304.144 kb on - strand, within PS417_19820 at 4304.176 kb on - strand, within PS417_19820 at 4304.252 kb on + strand at 4304.465 kb on + strand at 4304.465 kb on + strand at 4304.466 kb on - strand at 4304.588 kb on + strand, within PS417_19825 at 4304.589 kb on - strand, within PS417_19825 at 4304.987 kb on + strand at 4304.987 kb on + strand, within PS417_19825 at 4304.987 kb on + strand, within PS417_19825 at 4304.987 kb on + strand, within PS417_19825 at 4305.102 kb on + strand, within PS417_19825 at 4305.103 kb on - strand, within PS417_19825
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,302,585 - PS417_19815 0.63 -0.6 4,303,008 - +0.8 4,303,092 + -3.7 4,303,102 - -1.5 4,303,256 - PS417_19820 0.13 -3.0 4,303,347 + PS417_19820 0.20 -1.7 4,303,348 - PS417_19820 0.20 -3.0 4,303,588 + PS417_19820 0.40 -1.8 4,303,692 + PS417_19820 0.49 -4.2 4,303,692 + PS417_19820 0.49 -0.8 4,303,693 - PS417_19820 0.49 -6.0 4,303,693 - PS417_19820 0.49 -2.6 4,303,693 - PS417_19820 0.49 -4.0 4,304,144 - PS417_19820 0.86 +1.0 4,304,176 - PS417_19820 0.89 +0.0 4,304,252 + -5.0 4,304,465 + +0.4 4,304,465 + -2.8 4,304,466 - -5.2 4,304,588 + PS417_19825 0.11 -7.8 4,304,589 - PS417_19825 0.11 -4.2 4,304,987 + -2.4 4,304,987 + PS417_19825 0.38 -7.5 4,304,987 + PS417_19825 0.38 -4.0 4,304,987 + PS417_19825 0.38 -7.0 4,305,102 + PS417_19825 0.46 -6.7 4,305,103 - PS417_19825 0.46 -6.4
Or see this region's nucleotide sequence