Strain Fitness in Pseudomonas simiae WCS417 around PS417_18955

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18945 and PS417_18950 are separated by 17 nucleotidesPS417_18950 and PS417_18955 are separated by 20 nucleotidesPS417_18955 and PS417_18960 are separated by 73 nucleotidesPS417_18960 and PS417_18965 are separated by 131 nucleotides PS417_18945: PS417_18945 - endoribonuclease, at 4,103,166 to 4,103,588 _18945 PS417_18950: PS417_18950 - 3-dehydroquinate dehydratase, at 4,103,606 to 4,104,052 _18950 PS417_18955: PS417_18955 - FAD-dependent oxidoreductase, at 4,104,073 to 4,105,323 _18955 PS417_18960: PS417_18960 - methionine sulfoxide reductase A, at 4,105,397 to 4,105,903 _18960 PS417_18965: PS417_18965 - dienelactone hydrolase, at 4,106,035 to 4,107,075 _18965 Position (kb) 4104 4105 4106Strain fitness (log2 ratio) -3 -2 -1 0 1at 4103.211 kb on + strand, within PS417_18945at 4103.211 kb on + strand, within PS417_18945at 4103.217 kb on - strand, within PS417_18945at 4103.271 kb on + strand, within PS417_18945at 4103.271 kb on + strand, within PS417_18945at 4103.272 kb on - strand, within PS417_18945at 4103.272 kb on - strand, within PS417_18945at 4103.422 kb on - strand, within PS417_18945at 4103.675 kb on + strand, within PS417_18950at 4103.846 kb on + strand, within PS417_18950at 4103.846 kb on + strand, within PS417_18950at 4103.847 kb on - strand, within PS417_18950at 4103.847 kb on - strand, within PS417_18950at 4103.917 kb on + strand, within PS417_18950at 4103.917 kb on + strand, within PS417_18950at 4103.951 kb on + strand, within PS417_18950at 4103.951 kb on + strand, within PS417_18950at 4103.952 kb on - strand, within PS417_18950at 4103.952 kb on - strand, within PS417_18950at 4103.952 kb on - strand, within PS417_18950at 4104.072 kb on + strandat 4104.072 kb on + strandat 4104.143 kb on + strandat 4104.144 kb on - strandat 4104.166 kb on - strandat 4104.313 kb on - strand, within PS417_18955at 4104.313 kb on - strand, within PS417_18955at 4104.335 kb on - strand, within PS417_18955at 4104.544 kb on + strand, within PS417_18955at 4104.544 kb on + strand, within PS417_18955at 4104.545 kb on - strand, within PS417_18955at 4104.650 kb on + strand, within PS417_18955at 4104.689 kb on - strand, within PS417_18955at 4104.932 kb on - strand, within PS417_18955at 4104.932 kb on - strand, within PS417_18955at 4104.961 kb on + strandat 4104.962 kb on - strandat 4105.239 kb on + strandat 4105.240 kb on - strandat 4105.240 kb on - strandat 4105.282 kb on - strandat 4105.301 kb on - strandat 4105.310 kb on - strandat 4105.310 kb on - strandat 4105.355 kb on + strandat 4105.444 kb on + strandat 4105.445 kb on - strandat 4105.446 kb on + strandat 4105.446 kb on + strandat 4105.627 kb on - strand, within PS417_18960at 4105.771 kb on - strand, within PS417_18960at 4105.934 kb on + strandat 4105.935 kb on - strandat 4105.938 kb on + strandat 4105.958 kb on + strandat 4105.958 kb on + strandat 4105.959 kb on - strandat 4105.959 kb on - strandat 4105.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,103,211 + PS417_18945 0.11 +0.7
4,103,211 + PS417_18945 0.11 +0.9
4,103,217 - PS417_18945 0.12 -1.1
4,103,271 + PS417_18945 0.25 +0.2
4,103,271 + PS417_18945 0.25 +0.5
4,103,272 - PS417_18945 0.25 +0.5
4,103,272 - PS417_18945 0.25 +0.9
4,103,422 - PS417_18945 0.61 -0.7
4,103,675 + PS417_18950 0.15 -0.1
4,103,846 + PS417_18950 0.54 -0.9
4,103,846 + PS417_18950 0.54 -0.1
4,103,847 - PS417_18950 0.54 +0.5
4,103,847 - PS417_18950 0.54 -1.3
4,103,917 + PS417_18950 0.70 -0.2
4,103,917 + PS417_18950 0.70 +0.8
4,103,951 + PS417_18950 0.77 -2.9
4,103,951 + PS417_18950 0.77 +0.2
4,103,952 - PS417_18950 0.77 -0.6
4,103,952 - PS417_18950 0.77 +0.1
4,103,952 - PS417_18950 0.77 -2.7
4,104,072 + +1.2
4,104,072 + +0.7
4,104,143 + -1.2
4,104,144 - -0.4
4,104,166 - -1.6
4,104,313 - PS417_18955 0.19 -0.0
4,104,313 - PS417_18955 0.19 +0.5
4,104,335 - PS417_18955 0.21 +1.1
4,104,544 + PS417_18955 0.38 +0.4
4,104,544 + PS417_18955 0.38 -0.1
4,104,545 - PS417_18955 0.38 +1.1
4,104,650 + PS417_18955 0.46 +0.4
4,104,689 - PS417_18955 0.49 -1.0
4,104,932 - PS417_18955 0.69 +0.3
4,104,932 - PS417_18955 0.69 +1.7
4,104,961 + -0.0
4,104,962 - -0.3
4,105,239 + +0.5
4,105,240 - +0.5
4,105,240 - +0.2
4,105,282 - +0.0
4,105,301 - -0.2
4,105,310 - +0.7
4,105,310 - +0.3
4,105,355 + -0.7
4,105,444 + +0.9
4,105,445 - +0.1
4,105,446 + -0.2
4,105,446 + +0.8
4,105,627 - PS417_18960 0.45 +0.4
4,105,771 - PS417_18960 0.74 +1.3
4,105,934 + -0.6
4,105,935 - +0.0
4,105,938 + -1.6
4,105,958 + +0.7
4,105,958 + -0.7
4,105,959 - -0.6
4,105,959 - +0.5
4,105,959 - -0.4

Or see this region's nucleotide sequence