Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18945 and PS417_18950 are separated by 17 nucleotides PS417_18950 and PS417_18955 are separated by 20 nucleotides PS417_18955 and PS417_18960 are separated by 73 nucleotides PS417_18960 and PS417_18965 are separated by 131 nucleotides
PS417_18945: PS417_18945 - endoribonuclease, at 4,103,166 to 4,103,588
_18945
PS417_18950: PS417_18950 - 3-dehydroquinate dehydratase, at 4,103,606 to 4,104,052
_18950
PS417_18955: PS417_18955 - FAD-dependent oxidoreductase, at 4,104,073 to 4,105,323
_18955
PS417_18960: PS417_18960 - methionine sulfoxide reductase A, at 4,105,397 to 4,105,903
_18960
PS417_18965: PS417_18965 - dienelactone hydrolase, at 4,106,035 to 4,107,075
_18965
Position (kb)
4104
4105
4106 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4103.211 kb on + strand, within PS417_18945 at 4103.211 kb on + strand, within PS417_18945 at 4103.217 kb on - strand, within PS417_18945 at 4103.271 kb on + strand, within PS417_18945 at 4103.271 kb on + strand, within PS417_18945 at 4103.272 kb on - strand, within PS417_18945 at 4103.272 kb on - strand, within PS417_18945 at 4103.422 kb on - strand, within PS417_18945 at 4103.675 kb on + strand, within PS417_18950 at 4103.846 kb on + strand, within PS417_18950 at 4103.846 kb on + strand, within PS417_18950 at 4103.847 kb on - strand, within PS417_18950 at 4103.847 kb on - strand, within PS417_18950 at 4103.917 kb on + strand, within PS417_18950 at 4103.917 kb on + strand, within PS417_18950 at 4103.951 kb on + strand, within PS417_18950 at 4103.951 kb on + strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4103.952 kb on - strand, within PS417_18950 at 4104.072 kb on + strand at 4104.072 kb on + strand at 4104.143 kb on + strand at 4104.144 kb on - strand at 4104.166 kb on - strand at 4104.313 kb on - strand, within PS417_18955 at 4104.313 kb on - strand, within PS417_18955 at 4104.335 kb on - strand, within PS417_18955 at 4104.544 kb on + strand, within PS417_18955 at 4104.544 kb on + strand, within PS417_18955 at 4104.545 kb on - strand, within PS417_18955 at 4104.650 kb on + strand, within PS417_18955 at 4104.689 kb on - strand, within PS417_18955 at 4104.932 kb on - strand, within PS417_18955 at 4104.932 kb on - strand, within PS417_18955 at 4104.961 kb on + strand at 4104.962 kb on - strand at 4105.239 kb on + strand at 4105.240 kb on - strand at 4105.240 kb on - strand at 4105.282 kb on - strand at 4105.301 kb on - strand at 4105.310 kb on - strand at 4105.310 kb on - strand at 4105.355 kb on + strand at 4105.444 kb on + strand at 4105.445 kb on - strand at 4105.446 kb on + strand at 4105.446 kb on + strand at 4105.627 kb on - strand, within PS417_18960 at 4105.771 kb on - strand, within PS417_18960 at 4105.934 kb on + strand at 4105.935 kb on - strand at 4105.938 kb on + strand at 4105.958 kb on + strand at 4105.958 kb on + strand at 4105.959 kb on - strand at 4105.959 kb on - strand at 4105.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,103,211 + PS417_18945 0.11 +0.7 4,103,211 + PS417_18945 0.11 +0.9 4,103,217 - PS417_18945 0.12 -1.1 4,103,271 + PS417_18945 0.25 +0.2 4,103,271 + PS417_18945 0.25 +0.5 4,103,272 - PS417_18945 0.25 +0.5 4,103,272 - PS417_18945 0.25 +0.9 4,103,422 - PS417_18945 0.61 -0.7 4,103,675 + PS417_18950 0.15 -0.1 4,103,846 + PS417_18950 0.54 -0.9 4,103,846 + PS417_18950 0.54 -0.1 4,103,847 - PS417_18950 0.54 +0.5 4,103,847 - PS417_18950 0.54 -1.3 4,103,917 + PS417_18950 0.70 -0.2 4,103,917 + PS417_18950 0.70 +0.8 4,103,951 + PS417_18950 0.77 -2.9 4,103,951 + PS417_18950 0.77 +0.2 4,103,952 - PS417_18950 0.77 -0.6 4,103,952 - PS417_18950 0.77 +0.1 4,103,952 - PS417_18950 0.77 -2.7 4,104,072 + +1.2 4,104,072 + +0.7 4,104,143 + -1.2 4,104,144 - -0.4 4,104,166 - -1.6 4,104,313 - PS417_18955 0.19 -0.0 4,104,313 - PS417_18955 0.19 +0.5 4,104,335 - PS417_18955 0.21 +1.1 4,104,544 + PS417_18955 0.38 +0.4 4,104,544 + PS417_18955 0.38 -0.1 4,104,545 - PS417_18955 0.38 +1.1 4,104,650 + PS417_18955 0.46 +0.4 4,104,689 - PS417_18955 0.49 -1.0 4,104,932 - PS417_18955 0.69 +0.3 4,104,932 - PS417_18955 0.69 +1.7 4,104,961 + -0.0 4,104,962 - -0.3 4,105,239 + +0.5 4,105,240 - +0.5 4,105,240 - +0.2 4,105,282 - +0.0 4,105,301 - -0.2 4,105,310 - +0.7 4,105,310 - +0.3 4,105,355 + -0.7 4,105,444 + +0.9 4,105,445 - +0.1 4,105,446 + -0.2 4,105,446 + +0.8 4,105,627 - PS417_18960 0.45 +0.4 4,105,771 - PS417_18960 0.74 +1.3 4,105,934 + -0.6 4,105,935 - +0.0 4,105,938 + -1.6 4,105,958 + +0.7 4,105,958 + -0.7 4,105,959 - -0.6 4,105,959 - +0.5 4,105,959 - -0.4
Or see this region's nucleotide sequence