Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15120 and PS417_15125 overlap by 4 nucleotides PS417_15125 and PS417_15135 are separated by 281 nucleotides PS417_15135 and PS417_15140 are separated by 156 nucleotides
PS417_15120: PS417_15120 - chromosome segregation protein SMC, at 3,307,470 to 3,311,108
_15120
PS417_15125: PS417_15125 - glutathione S-transferase, at 3,311,105 to 3,311,698
_15125
PS417_15135: PS417_15135 - hypothetical protein, at 3,311,980 to 3,312,159
_15135
PS417_15140: PS417_15140 - 3-carboxymuconate cyclase, at 3,312,316 to 3,313,491
_15140
Position (kb)
3311
3312
3313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3311.026 kb on + strand at 3311.123 kb on + strand at 3311.123 kb on + strand at 3311.124 kb on - strand at 3311.349 kb on + strand, within PS417_15125 at 3311.409 kb on - strand, within PS417_15125 at 3311.526 kb on - strand, within PS417_15125 at 3311.696 kb on + strand at 3311.784 kb on - strand at 3312.047 kb on + strand, within PS417_15135 at 3312.048 kb on - strand, within PS417_15135 at 3312.267 kb on + strand at 3312.268 kb on - strand at 3312.590 kb on + strand, within PS417_15140 at 3312.591 kb on - strand, within PS417_15140 at 3312.861 kb on - strand at 3312.909 kb on - strand, within PS417_15140 at 3313.012 kb on + strand, within PS417_15140 at 3313.077 kb on - strand, within PS417_15140 at 3313.077 kb on - strand, within PS417_15140
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,311,026 + -0.7 3,311,123 + +0.7 3,311,123 + +0.2 3,311,124 - +1.7 3,311,349 + PS417_15125 0.41 -3.0 3,311,409 - PS417_15125 0.51 -0.2 3,311,526 - PS417_15125 0.71 -0.0 3,311,696 + +0.1 3,311,784 - +0.4 3,312,047 + PS417_15135 0.37 -1.8 3,312,048 - PS417_15135 0.38 -1.1 3,312,267 + -0.4 3,312,268 - +0.3 3,312,590 + PS417_15140 0.23 -0.9 3,312,591 - PS417_15140 0.23 +0.0 3,312,861 - +0.3 3,312,909 - PS417_15140 0.50 +0.4 3,313,012 + PS417_15140 0.59 -0.3 3,313,077 - PS417_15140 0.65 -0.3 3,313,077 - PS417_15140 0.65 -2.0
Or see this region's nucleotide sequence