Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15105 and PS417_15110 overlap by 4 nucleotides PS417_15110 and PS417_15115 are separated by 98 nucleotides
PS417_15105: PS417_15105 - membrane protein, at 3,302,757 to 3,304,496
_15105
PS417_15110: PS417_15110 - protein BatD, at 3,304,493 to 3,306,133
_15110
PS417_15115: PS417_15115 - exonuclease SbcD, at 3,306,232 to 3,307,473
_15115
Position (kb)
3304
3305
3306
3307 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3303.712 kb on + strand, within PS417_15105 at 3303.790 kb on - strand, within PS417_15105 at 3303.841 kb on - strand, within PS417_15105 at 3303.930 kb on + strand, within PS417_15105 at 3303.931 kb on - strand, within PS417_15105 at 3303.931 kb on - strand, within PS417_15105 at 3303.972 kb on + strand, within PS417_15105 at 3303.982 kb on - strand, within PS417_15105 at 3304.815 kb on - strand, within PS417_15110 at 3304.922 kb on + strand, within PS417_15110 at 3304.922 kb on + strand, within PS417_15110 at 3304.923 kb on - strand, within PS417_15110 at 3305.105 kb on + strand, within PS417_15110 at 3305.578 kb on - strand, within PS417_15110 at 3305.578 kb on - strand, within PS417_15110 at 3305.860 kb on + strand, within PS417_15110 at 3306.005 kb on + strand at 3306.069 kb on + strand at 3306.070 kb on - strand at 3306.131 kb on + strand at 3306.131 kb on + strand at 3306.194 kb on - strand at 3306.212 kb on + strand at 3306.212 kb on + strand at 3306.422 kb on - strand, within PS417_15115 at 3306.704 kb on - strand, within PS417_15115 at 3306.704 kb on - strand, within PS417_15115
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,303,712 + PS417_15105 0.55 -1.4 3,303,790 - PS417_15105 0.59 -4.4 3,303,841 - PS417_15105 0.62 -0.0 3,303,930 + PS417_15105 0.67 -2.5 3,303,931 - PS417_15105 0.67 -0.3 3,303,931 - PS417_15105 0.67 -1.6 3,303,972 + PS417_15105 0.70 -2.3 3,303,982 - PS417_15105 0.70 -2.9 3,304,815 - PS417_15110 0.20 -1.0 3,304,922 + PS417_15110 0.26 -1.9 3,304,922 + PS417_15110 0.26 -0.4 3,304,923 - PS417_15110 0.26 -2.6 3,305,105 + PS417_15110 0.37 -3.7 3,305,578 - PS417_15110 0.66 -2.8 3,305,578 - PS417_15110 0.66 +1.5 3,305,860 + PS417_15110 0.83 -3.0 3,306,005 + -0.7 3,306,069 + -3.7 3,306,070 - -1.8 3,306,131 + -0.0 3,306,131 + -0.8 3,306,194 - -0.8 3,306,212 + +0.1 3,306,212 + +1.1 3,306,422 - PS417_15115 0.15 +0.1 3,306,704 - PS417_15115 0.38 -1.9 3,306,704 - PS417_15115 0.38 -0.3
Or see this region's nucleotide sequence