Strain Fitness in Pseudomonas simiae WCS417 around PS417_13765

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13755 and PS417_13760 are separated by 103 nucleotidesPS417_13760 and PS417_13765 are separated by 58 nucleotidesPS417_13765 and PS417_13770 are separated by 160 nucleotides PS417_13755: PS417_13755 - oxidoreductase, at 3,021,309 to 3,022,058 _13755 PS417_13760: PS417_13760 - transcriptional regulator, at 3,022,162 to 3,022,521 _13760 PS417_13765: PS417_13765 - histidine kinase, at 3,022,580 to 3,024,193 _13765 PS417_13770: PS417_13770 - major facilitator transporter, at 3,024,354 to 3,025,562 _13770 Position (kb) 3022 3023 3024 3025Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3021.610 kb on + strand, within PS417_13755at 3021.690 kb on + strand, within PS417_13755at 3021.952 kb on - strand, within PS417_13755at 3021.952 kb on - strand, within PS417_13755at 3022.029 kb on + strandat 3022.029 kb on + strandat 3022.030 kb on - strandat 3022.095 kb on - strandat 3022.134 kb on + strandat 3022.267 kb on + strand, within PS417_13760at 3022.277 kb on + strand, within PS417_13760at 3022.394 kb on - strand, within PS417_13760at 3022.464 kb on + strand, within PS417_13760at 3022.465 kb on - strand, within PS417_13760at 3022.675 kb on + strandat 3022.676 kb on - strandat 3022.760 kb on - strand, within PS417_13765at 3022.780 kb on + strand, within PS417_13765at 3022.968 kb on - strand, within PS417_13765at 3022.968 kb on - strand, within PS417_13765at 3023.606 kb on + strand, within PS417_13765at 3023.607 kb on - strand, within PS417_13765at 3023.607 kb on - strandat 3023.608 kb on + strand, within PS417_13765at 3023.609 kb on - strand, within PS417_13765at 3023.609 kb on - strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.825 kb on + strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.826 kb on - strand, within PS417_13765at 3023.827 kb on + strand, within PS417_13765at 3023.827 kb on + strand, within PS417_13765at 3023.828 kb on - strand, within PS417_13765at 3023.828 kb on - strand, within PS417_13765at 3023.828 kb on - strand, within PS417_13765at 3023.828 kb on - strand, within PS417_13765at 3023.829 kb on + strand, within PS417_13765at 3023.829 kb on + strand, within PS417_13765at 3023.829 kb on + strand, within PS417_13765at 3023.829 kb on + strand, within PS417_13765at 3023.829 kb on + strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3023.830 kb on - strand, within PS417_13765at 3024.046 kb on + strandat 3024.047 kb on - strandat 3024.118 kb on - strandat 3024.200 kb on - strandat 3024.200 kb on - strandat 3024.200 kb on - strandat 3024.200 kb on - strandat 3024.202 kb on - strandat 3024.202 kb on - strandat 3024.202 kb on - strandat 3024.274 kb on - strandat 3024.274 kb on - strandat 3024.281 kb on - strandat 3024.281 kb on - strandat 3024.291 kb on - strandat 3024.429 kb on + strandat 3024.430 kb on - strandat 3024.724 kb on - strand, within PS417_13770at 3024.961 kb on - strand, within PS417_13770at 3024.961 kb on - strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.062 kb on + strand, within PS417_13770at 3025.071 kb on + strand, within PS417_13770

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,021,610 + PS417_13755 0.40 -1.3
3,021,690 + PS417_13755 0.51 -0.1
3,021,952 - PS417_13755 0.86 +0.2
3,021,952 - PS417_13755 0.86 +1.2
3,022,029 + +0.6
3,022,029 + -2.3
3,022,030 - -1.5
3,022,095 - -0.9
3,022,134 + -0.2
3,022,267 + PS417_13760 0.29 +0.1
3,022,277 + PS417_13760 0.32 -1.1
3,022,394 - PS417_13760 0.64 -0.6
3,022,464 + PS417_13760 0.84 +1.1
3,022,465 - PS417_13760 0.84 -0.2
3,022,675 + +3.0
3,022,676 - +1.8
3,022,760 - PS417_13765 0.11 +0.2
3,022,780 + PS417_13765 0.12 -0.6
3,022,968 - PS417_13765 0.24 -3.1
3,022,968 - PS417_13765 0.24 +0.7
3,023,606 + PS417_13765 0.64 -1.9
3,023,607 - PS417_13765 0.64 -0.8
3,023,607 - +1.3
3,023,608 + PS417_13765 0.64 +0.5
3,023,609 - PS417_13765 0.64 +1.1
3,023,609 - PS417_13765 0.64 +0.0
3,023,825 + PS417_13765 0.77 -2.6
3,023,825 + PS417_13765 0.77 +0.9
3,023,825 + PS417_13765 0.77 -0.2
3,023,825 + PS417_13765 0.77 +1.1
3,023,825 + PS417_13765 0.77 -1.6
3,023,825 + PS417_13765 0.77 -1.5
3,023,825 + PS417_13765 0.77 +1.1
3,023,825 + PS417_13765 0.77 -0.5
3,023,825 + PS417_13765 0.77 -0.3
3,023,825 + PS417_13765 0.77 -0.2
3,023,826 - PS417_13765 0.77 -0.5
3,023,826 - PS417_13765 0.77 +0.0
3,023,826 - PS417_13765 0.77 +0.6
3,023,826 - PS417_13765 0.77 -0.6
3,023,826 - PS417_13765 0.77 -1.0
3,023,826 - PS417_13765 0.77 +0.7
3,023,827 + PS417_13765 0.77 +0.3
3,023,827 + PS417_13765 0.77 +0.1
3,023,828 - PS417_13765 0.77 -0.3
3,023,828 - PS417_13765 0.77 -0.3
3,023,828 - PS417_13765 0.77 -1.4
3,023,828 - PS417_13765 0.77 +0.2
3,023,829 + PS417_13765 0.77 -0.7
3,023,829 + PS417_13765 0.77 +0.2
3,023,829 + PS417_13765 0.77 +0.0
3,023,829 + PS417_13765 0.77 -0.8
3,023,829 + PS417_13765 0.77 -0.1
3,023,830 - PS417_13765 0.77 -1.3
3,023,830 - PS417_13765 0.77 -2.5
3,023,830 - PS417_13765 0.77 -0.6
3,023,830 - PS417_13765 0.77 -0.2
3,023,830 - PS417_13765 0.77 -0.4
3,023,830 - PS417_13765 0.77 -1.9
3,024,046 + -0.1
3,024,047 - +0.2
3,024,118 - -0.5
3,024,200 - -1.1
3,024,200 - -1.5
3,024,200 - -0.4
3,024,200 - -0.5
3,024,202 - -0.2
3,024,202 - -0.8
3,024,202 - +0.8
3,024,274 - -0.5
3,024,274 - +0.3
3,024,281 - +0.3
3,024,281 - -1.6
3,024,291 - -2.6
3,024,429 + -1.0
3,024,430 - +0.4
3,024,724 - PS417_13770 0.31 -0.7
3,024,961 - PS417_13770 0.50 +0.5
3,024,961 - PS417_13770 0.50 +0.8
3,025,062 + PS417_13770 0.59 +0.5
3,025,062 + PS417_13770 0.59 -0.3
3,025,062 + PS417_13770 0.59 -2.5
3,025,071 + PS417_13770 0.59 -0.7

Or see this region's nucleotide sequence