Strain Fitness in Pseudomonas simiae WCS417 around PS417_13320

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13315 and PS417_13320 overlap by 4 nucleotidesPS417_13320 and PS417_13325 overlap by 14 nucleotidesPS417_13325 and PS417_13330 are separated by 15 nucleotides PS417_13315: PS417_13315 - hypothetical protein, at 2,925,738 to 2,927,459 _13315 PS417_13320: PS417_13320 - L-alanine-DL-glutamate epimerase, at 2,927,456 to 2,928,649 _13320 PS417_13325: PS417_13325 - hypothetical protein, at 2,928,636 to 2,929,514 _13325 PS417_13330: PS417_13330 - autotransporter, at 2,929,530 to 2,931,185 _13330 Position (kb) 2927 2928 2929Strain fitness (log2 ratio) -2 -1 0 1at 2926.969 kb on + strand, within PS417_13315at 2926.970 kb on - strand, within PS417_13315at 2926.970 kb on - strand, within PS417_13315at 2927.272 kb on + strand, within PS417_13315at 2927.272 kb on + strand, within PS417_13315at 2927.273 kb on - strand, within PS417_13315at 2927.273 kb on - strand, within PS417_13315at 2927.404 kb on + strandat 2927.405 kb on - strandat 2927.452 kb on + strandat 2927.453 kb on - strandat 2927.600 kb on - strand, within PS417_13320at 2927.748 kb on + strand, within PS417_13320at 2928.270 kb on + strand, within PS417_13320at 2928.271 kb on - strand, within PS417_13320at 2928.271 kb on - strand, within PS417_13320at 2928.271 kb on - strandat 2928.387 kb on + strand, within PS417_13320at 2928.387 kb on + strand, within PS417_13320at 2928.501 kb on + strand, within PS417_13320at 2928.501 kb on + strand, within PS417_13320at 2928.631 kb on - strandat 2928.649 kb on + strandat 2928.649 kb on + strandat 2928.728 kb on - strand, within PS417_13325at 2929.253 kb on + strand, within PS417_13325at 2929.253 kb on + strand, within PS417_13325at 2929.254 kb on - strand, within PS417_13325at 2929.254 kb on - strand, within PS417_13325at 2929.396 kb on + strand, within PS417_13325at 2929.579 kb on + strandat 2929.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,926,969 + PS417_13315 0.71 -0.0
2,926,970 - PS417_13315 0.72 +0.1
2,926,970 - PS417_13315 0.72 -2.7
2,927,272 + PS417_13315 0.89 -1.2
2,927,272 + PS417_13315 0.89 -2.2
2,927,273 - PS417_13315 0.89 +0.1
2,927,273 - PS417_13315 0.89 -0.3
2,927,404 + -1.3
2,927,405 - +1.7
2,927,452 + +1.1
2,927,453 - +1.3
2,927,600 - PS417_13320 0.12 -0.6
2,927,748 + PS417_13320 0.24 -1.6
2,928,270 + PS417_13320 0.68 +1.2
2,928,271 - PS417_13320 0.68 -0.3
2,928,271 - PS417_13320 0.68 +0.3
2,928,271 - -0.3
2,928,387 + PS417_13320 0.78 -1.4
2,928,387 + PS417_13320 0.78 -0.4
2,928,501 + PS417_13320 0.88 +0.4
2,928,501 + PS417_13320 0.88 -0.5
2,928,631 - +0.0
2,928,649 + -0.6
2,928,649 + -1.1
2,928,728 - PS417_13325 0.10 -0.3
2,929,253 + PS417_13325 0.70 -1.5
2,929,253 + PS417_13325 0.70 -0.7
2,929,254 - PS417_13325 0.70 +0.2
2,929,254 - PS417_13325 0.70 -0.7
2,929,396 + PS417_13325 0.86 -0.1
2,929,579 + -0.7
2,929,579 + +0.8

Or see this region's nucleotide sequence