Strain Fitness in Pseudomonas simiae WCS417 around PS417_11805

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11800 and PS417_11805 are separated by 113 nucleotidesPS417_11805 and PS417_11810 are separated by 17 nucleotidesPS417_11810 and PS417_11815 are separated by 29 nucleotides PS417_11800: PS417_11800 - LysR family transcriptional regulator, at 2,568,309 to 2,569,202 _11800 PS417_11805: PS417_11805 - D-threo-aldose 1-dehydrogenase, at 2,569,316 to 2,570,320 _11805 PS417_11810: PS417_11810 - oxidoreductase, at 2,570,338 to 2,571,135 _11810 PS417_11815: PS417_11815 - XoxI, at 2,571,165 to 2,571,581 _11815 Position (kb) 2569 2570 2571Strain fitness (log2 ratio) -2 -1 0 1at 2568.349 kb on - strandat 2568.823 kb on + strandat 2568.823 kb on + strand, within PS417_11800at 2568.823 kb on + strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.833 kb on + strand, within PS417_11800at 2568.910 kb on + strand, within PS417_11800at 2568.910 kb on + strand, within PS417_11800at 2568.911 kb on - strandat 2569.265 kb on + strandat 2569.266 kb on - strandat 2569.312 kb on + strandat 2569.313 kb on - strandat 2569.572 kb on + strand, within PS417_11805at 2569.572 kb on + strand, within PS417_11805at 2569.573 kb on - strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.935 kb on - strand, within PS417_11805at 2570.248 kb on + strandat 2570.318 kb on + strandat 2570.363 kb on + strandat 2570.611 kb on - strand, within PS417_11810at 2570.666 kb on - strand, within PS417_11810at 2570.666 kb on - strand, within PS417_11810at 2570.707 kb on + strandat 2570.798 kb on - strand, within PS417_11810at 2571.157 kb on + strandat 2571.157 kb on + strandat 2571.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,568,349 - -0.1
2,568,823 + +0.8
2,568,823 + PS417_11800 0.57 -0.1
2,568,823 + PS417_11800 0.57 +0.1
2,568,824 - PS417_11800 0.58 -0.2
2,568,824 - PS417_11800 0.58 +1.5
2,568,824 - PS417_11800 0.58 +0.3
2,568,833 + PS417_11800 0.59 +0.4
2,568,910 + PS417_11800 0.67 -1.6
2,568,910 + PS417_11800 0.67 +0.4
2,568,911 - +0.1
2,569,265 + -1.6
2,569,266 - +1.1
2,569,312 + -1.5
2,569,313 - -0.7
2,569,572 + PS417_11805 0.25 -1.2
2,569,572 + PS417_11805 0.25 -2.2
2,569,573 - PS417_11805 0.26 -1.4
2,569,772 + PS417_11805 0.45 -0.7
2,569,772 + PS417_11805 0.45 +0.4
2,569,857 + PS417_11805 0.54 -0.3
2,569,857 + PS417_11805 0.54 -0.6
2,569,935 - PS417_11805 0.62 -0.6
2,570,248 + +1.1
2,570,318 + -0.6
2,570,363 + -1.6
2,570,611 - PS417_11810 0.34 +0.8
2,570,666 - PS417_11810 0.41 -1.7
2,570,666 - PS417_11810 0.41 +0.7
2,570,707 + +1.2
2,570,798 - PS417_11810 0.58 -1.3
2,571,157 + -0.6
2,571,157 + -0.9
2,571,162 - -0.0

Or see this region's nucleotide sequence