Strain Fitness in Pseudomonas simiae WCS417 around PS417_08675

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08665 and PS417_08670 are separated by 76 nucleotidesPS417_08670 and PS417_08675 overlap by 17 nucleotidesPS417_08675 and PS417_08680 are separated by 128 nucleotidesPS417_08680 and PS417_08685 overlap by 4 nucleotides PS417_08665: PS417_08665 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,890,659 to 1,891,261 _08665 PS417_08670: PS417_08670 - molybdopterin biosynthesis protein B, at 1,891,338 to 1,891,877 _08670 PS417_08675: PS417_08675 - molybdenum cofactor biosynthesis protein MoaA, at 1,891,861 to 1,893,087 _08675 PS417_08680: PS417_08680 - flagellar biosynthesis protein FlhB, at 1,893,216 to 1,893,545 _08680 PS417_08685: PS417_08685 - flagellar hook-length control protein FliK, at 1,893,542 to 1,895,119 _08685 Position (kb) 1891 1892 1893 1894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1891.071 kb on + strand, within PS417_08665at 1891.071 kb on + strand, within PS417_08665at 1891.072 kb on - strand, within PS417_08665at 1891.072 kb on - strand, within PS417_08665at 1891.195 kb on + strand, within PS417_08665at 1891.299 kb on + strandat 1891.300 kb on - strandat 1891.301 kb on + strandat 1891.301 kb on + strandat 1891.302 kb on - strandat 1891.302 kb on - strandat 1891.384 kb on + strandat 1891.406 kb on + strand, within PS417_08670at 1892.324 kb on + strand, within PS417_08675at 1892.324 kb on + strand, within PS417_08675at 1892.325 kb on - strand, within PS417_08675at 1892.486 kb on - strand, within PS417_08675at 1892.821 kb on + strand, within PS417_08675at 1892.821 kb on + strand, within PS417_08675at 1892.822 kb on - strand, within PS417_08675at 1892.822 kb on - strand, within PS417_08675at 1893.069 kb on - strandat 1893.069 kb on - strandat 1893.337 kb on + strand, within PS417_08680at 1893.407 kb on - strandat 1893.503 kb on - strand, within PS417_08680

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,891,071 + PS417_08665 0.68 -0.4
1,891,071 + PS417_08665 0.68 -0.7
1,891,072 - PS417_08665 0.68 -0.3
1,891,072 - PS417_08665 0.68 +0.7
1,891,195 + PS417_08665 0.89 +1.0
1,891,299 + +0.0
1,891,300 - -0.1
1,891,301 + +2.3
1,891,301 + -3.4
1,891,302 - -0.3
1,891,302 - +1.0
1,891,384 + +0.6
1,891,406 + PS417_08670 0.13 +0.1
1,892,324 + PS417_08675 0.38 -0.1
1,892,324 + PS417_08675 0.38 +0.2
1,892,325 - PS417_08675 0.38 -1.0
1,892,486 - PS417_08675 0.51 +0.2
1,892,821 + PS417_08675 0.78 +1.5
1,892,821 + PS417_08675 0.78 +0.1
1,892,822 - PS417_08675 0.78 -0.6
1,892,822 - PS417_08675 0.78 -0.3
1,893,069 - -0.3
1,893,069 - +0.4
1,893,337 + PS417_08680 0.37 +1.0
1,893,407 - +0.5
1,893,503 - PS417_08680 0.87 +0.3

Or see this region's nucleotide sequence