Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08580 and PS417_08585 are separated by 164 nucleotides PS417_08585 and PS417_08590 overlap by 4 nucleotides PS417_08590 and PS417_08595 are separated by 38 nucleotides
PS417_08580: PS417_08580 - histidine kinase, at 1,872,644 to 1,874,953
_08580
PS417_08585: PS417_08585 - ATPase AAA, at 1,875,118 to 1,876,008
_08585
PS417_08590: PS417_08590 - hypothetical protein, at 1,876,005 to 1,876,487
_08590
PS417_08595: PS417_08595 - histidine kinase, at 1,876,526 to 1,880,173
_08595
Position (kb)
1875
1876
1877 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1874.390 kb on + strand, within PS417_08580 at 1874.391 kb on - strand, within PS417_08580 at 1874.515 kb on - strand, within PS417_08580 at 1874.515 kb on - strand, within PS417_08580 at 1874.561 kb on - strand, within PS417_08580 at 1874.845 kb on - strand at 1874.920 kb on + strand at 1874.921 kb on - strand at 1874.997 kb on - strand at 1874.997 kb on - strand at 1874.997 kb on - strand at 1875.081 kb on - strand at 1875.114 kb on - strand at 1875.596 kb on + strand, within PS417_08585 at 1875.644 kb on + strand, within PS417_08585 at 1875.645 kb on - strand, within PS417_08585 at 1875.652 kb on + strand, within PS417_08585 at 1875.652 kb on + strand, within PS417_08585 at 1875.653 kb on - strand, within PS417_08585 at 1875.653 kb on - strand, within PS417_08585 at 1875.807 kb on + strand, within PS417_08585 at 1876.015 kb on + strand at 1876.016 kb on - strand at 1876.044 kb on + strand at 1876.045 kb on - strand at 1876.316 kb on + strand, within PS417_08590 at 1876.422 kb on - strand, within PS417_08590 at 1876.528 kb on - strand at 1876.528 kb on - strand at 1876.882 kb on + strand at 1876.882 kb on + strand at 1876.883 kb on - strand at 1876.883 kb on - strand at 1876.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,874,390 + PS417_08580 0.76 -2.5 1,874,391 - PS417_08580 0.76 -2.4 1,874,515 - PS417_08580 0.81 -1.2 1,874,515 - PS417_08580 0.81 +0.3 1,874,561 - PS417_08580 0.83 -0.2 1,874,845 - -0.6 1,874,920 + +0.3 1,874,921 - -2.8 1,874,997 - +1.4 1,874,997 - +0.1 1,874,997 - +0.2 1,875,081 - -0.9 1,875,114 - -1.0 1,875,596 + PS417_08585 0.54 -0.2 1,875,644 + PS417_08585 0.59 -1.3 1,875,645 - PS417_08585 0.59 +0.3 1,875,652 + PS417_08585 0.60 -2.9 1,875,652 + PS417_08585 0.60 -2.1 1,875,653 - PS417_08585 0.60 -2.0 1,875,653 - PS417_08585 0.60 -1.7 1,875,807 + PS417_08585 0.77 -2.9 1,876,015 + +0.7 1,876,016 - -0.6 1,876,044 + +0.3 1,876,045 - +0.1 1,876,316 + PS417_08590 0.64 -1.1 1,876,422 - PS417_08590 0.86 +0.8 1,876,528 - -0.7 1,876,528 - -0.3 1,876,882 + +0.3 1,876,882 + +1.1 1,876,883 - +0.3 1,876,883 - +0.6 1,876,883 - -0.2
Or see this region's nucleotide sequence