Strain Fitness in Pseudomonas simiae WCS417 around PS417_08585

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08580 and PS417_08585 are separated by 164 nucleotidesPS417_08585 and PS417_08590 overlap by 4 nucleotidesPS417_08590 and PS417_08595 are separated by 38 nucleotides PS417_08580: PS417_08580 - histidine kinase, at 1,872,644 to 1,874,953 _08580 PS417_08585: PS417_08585 - ATPase AAA, at 1,875,118 to 1,876,008 _08585 PS417_08590: PS417_08590 - hypothetical protein, at 1,876,005 to 1,876,487 _08590 PS417_08595: PS417_08595 - histidine kinase, at 1,876,526 to 1,880,173 _08595 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -3 -2 -1 0 1at 1874.390 kb on + strand, within PS417_08580at 1874.391 kb on - strand, within PS417_08580at 1874.515 kb on - strand, within PS417_08580at 1874.515 kb on - strand, within PS417_08580at 1874.561 kb on - strand, within PS417_08580at 1874.845 kb on - strandat 1874.920 kb on + strandat 1874.921 kb on - strandat 1874.997 kb on - strandat 1874.997 kb on - strandat 1874.997 kb on - strandat 1875.081 kb on - strandat 1875.114 kb on - strandat 1875.596 kb on + strand, within PS417_08585at 1875.644 kb on + strand, within PS417_08585at 1875.645 kb on - strand, within PS417_08585at 1875.652 kb on + strand, within PS417_08585at 1875.652 kb on + strand, within PS417_08585at 1875.653 kb on - strand, within PS417_08585at 1875.653 kb on - strand, within PS417_08585at 1875.807 kb on + strand, within PS417_08585at 1876.015 kb on + strandat 1876.016 kb on - strandat 1876.044 kb on + strandat 1876.045 kb on - strandat 1876.316 kb on + strand, within PS417_08590at 1876.422 kb on - strand, within PS417_08590at 1876.528 kb on - strandat 1876.528 kb on - strandat 1876.882 kb on + strandat 1876.882 kb on + strandat 1876.883 kb on - strandat 1876.883 kb on - strandat 1876.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,874,390 + PS417_08580 0.76 -2.5
1,874,391 - PS417_08580 0.76 -2.4
1,874,515 - PS417_08580 0.81 -1.2
1,874,515 - PS417_08580 0.81 +0.3
1,874,561 - PS417_08580 0.83 -0.2
1,874,845 - -0.6
1,874,920 + +0.3
1,874,921 - -2.8
1,874,997 - +1.4
1,874,997 - +0.1
1,874,997 - +0.2
1,875,081 - -0.9
1,875,114 - -1.0
1,875,596 + PS417_08585 0.54 -0.2
1,875,644 + PS417_08585 0.59 -1.3
1,875,645 - PS417_08585 0.59 +0.3
1,875,652 + PS417_08585 0.60 -2.9
1,875,652 + PS417_08585 0.60 -2.1
1,875,653 - PS417_08585 0.60 -2.0
1,875,653 - PS417_08585 0.60 -1.7
1,875,807 + PS417_08585 0.77 -2.9
1,876,015 + +0.7
1,876,016 - -0.6
1,876,044 + +0.3
1,876,045 - +0.1
1,876,316 + PS417_08590 0.64 -1.1
1,876,422 - PS417_08590 0.86 +0.8
1,876,528 - -0.7
1,876,528 - -0.3
1,876,882 + +0.3
1,876,882 + +1.1
1,876,883 - +0.3
1,876,883 - +0.6
1,876,883 - -0.2

Or see this region's nucleotide sequence