Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08370 and PS417_08375 are separated by 15 nucleotides PS417_08375 and PS417_08380 overlap by 4 nucleotides
PS417_08370: PS417_08370 - ABC transporter, at 1,834,904 to 1,836,634
_08370
PS417_08375: PS417_08375 - ABC transporter permease, at 1,836,650 to 1,837,375
_08375
PS417_08380: PS417_08380 - ABC transporter ATP-binding protein, at 1,837,372 to 1,838,034
_08380
Position (kb)
1836
1837
1838 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1835.692 kb on + strand, within PS417_08370 at 1835.692 kb on + strand, within PS417_08370 at 1835.693 kb on - strand, within PS417_08370 at 1835.707 kb on + strand, within PS417_08370 at 1835.708 kb on - strand, within PS417_08370 at 1835.791 kb on - strand, within PS417_08370 at 1835.791 kb on - strand, within PS417_08370 at 1835.948 kb on + strand, within PS417_08370 at 1835.949 kb on - strand, within PS417_08370 at 1835.949 kb on - strand, within PS417_08370 at 1835.955 kb on + strand, within PS417_08370 at 1835.955 kb on + strand, within PS417_08370 at 1835.955 kb on + strand, within PS417_08370 at 1835.956 kb on - strand, within PS417_08370 at 1836.152 kb on - strand, within PS417_08370 at 1836.367 kb on - strand, within PS417_08370 at 1836.408 kb on - strand, within PS417_08370 at 1836.447 kb on + strand, within PS417_08370 at 1836.447 kb on + strand at 1836.448 kb on - strand, within PS417_08370 at 1836.450 kb on + strand, within PS417_08370 at 1836.450 kb on + strand, within PS417_08370 at 1836.451 kb on - strand, within PS417_08370 at 1836.539 kb on + strand at 1836.707 kb on - strand at 1836.707 kb on - strand at 1836.772 kb on + strand, within PS417_08375 at 1836.939 kb on + strand, within PS417_08375 at 1836.939 kb on + strand, within PS417_08375 at 1836.940 kb on - strand, within PS417_08375 at 1836.940 kb on - strand, within PS417_08375 at 1837.009 kb on - strand, within PS417_08375 at 1837.009 kb on - strand at 1837.040 kb on + strand, within PS417_08375 at 1837.041 kb on - strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.098 kb on + strand, within PS417_08375 at 1837.099 kb on - strand, within PS417_08375 at 1837.099 kb on - strand, within PS417_08375 at 1837.187 kb on + strand, within PS417_08375 at 1837.194 kb on + strand, within PS417_08375 at 1837.195 kb on - strand, within PS417_08375 at 1837.195 kb on - strand, within PS417_08375 at 1837.259 kb on + strand, within PS417_08375 at 1837.259 kb on + strand, within PS417_08375 at 1837.260 kb on - strand, within PS417_08375 at 1837.260 kb on - strand, within PS417_08375 at 1837.260 kb on - strand, within PS417_08375 at 1837.260 kb on - strand, within PS417_08375 at 1837.260 kb on - strand, within PS417_08375 at 1837.263 kb on + strand, within PS417_08375 at 1837.263 kb on + strand, within PS417_08375 at 1837.264 kb on - strand, within PS417_08375 at 1837.311 kb on + strand at 1837.312 kb on - strand at 1837.312 kb on - strand at 1837.315 kb on + strand at 1837.352 kb on + strand at 1837.364 kb on + strand at 1837.487 kb on + strand, within PS417_08380 at 1837.487 kb on + strand, within PS417_08380 at 1837.487 kb on + strand, within PS417_08380 at 1837.487 kb on + strand, within PS417_08380 at 1837.488 kb on - strand, within PS417_08380 at 1837.488 kb on - strand, within PS417_08380 at 1837.488 kb on - strand, within PS417_08380 at 1837.488 kb on - strand, within PS417_08380 at 1837.645 kb on + strand at 1837.645 kb on + strand, within PS417_08380 at 1837.646 kb on - strand, within PS417_08380 at 1837.646 kb on - strand, within PS417_08380 at 1837.646 kb on - strand, within PS417_08380 at 1837.646 kb on - strand, within PS417_08380 at 1838.013 kb on + strand at 1838.014 kb on - strand at 1838.089 kb on - strand at 1838.159 kb on - strand at 1838.159 kb on - strand at 1838.159 kb on - strand at 1838.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,835,692 + PS417_08370 0.46 -2.6 1,835,692 + PS417_08370 0.46 -1.4 1,835,693 - PS417_08370 0.46 -0.5 1,835,707 + PS417_08370 0.46 -0.2 1,835,708 - PS417_08370 0.46 -1.7 1,835,791 - PS417_08370 0.51 -0.0 1,835,791 - PS417_08370 0.51 +0.1 1,835,948 + PS417_08370 0.60 -0.4 1,835,949 - PS417_08370 0.60 +0.3 1,835,949 - PS417_08370 0.60 -1.2 1,835,955 + PS417_08370 0.61 +2.3 1,835,955 + PS417_08370 0.61 -1.0 1,835,955 + PS417_08370 0.61 -0.2 1,835,956 - PS417_08370 0.61 -1.1 1,836,152 - PS417_08370 0.72 -2.3 1,836,367 - PS417_08370 0.85 +0.7 1,836,408 - PS417_08370 0.87 -0.9 1,836,447 + PS417_08370 0.89 -0.3 1,836,447 + -0.2 1,836,448 - PS417_08370 0.89 +1.6 1,836,450 + PS417_08370 0.89 +0.3 1,836,450 + PS417_08370 0.89 +1.8 1,836,451 - PS417_08370 0.89 +0.3 1,836,539 + -0.5 1,836,707 - +0.1 1,836,707 - -0.5 1,836,772 + PS417_08375 0.17 +0.1 1,836,939 + PS417_08375 0.40 -1.6 1,836,939 + PS417_08375 0.40 +0.6 1,836,940 - PS417_08375 0.40 +1.5 1,836,940 - PS417_08375 0.40 +0.1 1,837,009 - PS417_08375 0.49 -0.0 1,837,009 - +1.5 1,837,040 + PS417_08375 0.54 -2.7 1,837,041 - PS417_08375 0.54 -0.2 1,837,098 + PS417_08375 0.62 -0.1 1,837,098 + PS417_08375 0.62 -1.7 1,837,098 + PS417_08375 0.62 -0.1 1,837,098 + PS417_08375 0.62 -0.3 1,837,098 + PS417_08375 0.62 -1.2 1,837,098 + PS417_08375 0.62 +0.1 1,837,098 + PS417_08375 0.62 -0.3 1,837,099 - PS417_08375 0.62 -1.3 1,837,099 - PS417_08375 0.62 -0.6 1,837,187 + PS417_08375 0.74 -1.5 1,837,194 + PS417_08375 0.75 -0.8 1,837,195 - PS417_08375 0.75 +0.7 1,837,195 - PS417_08375 0.75 -1.8 1,837,259 + PS417_08375 0.84 +1.6 1,837,259 + PS417_08375 0.84 +0.6 1,837,260 - PS417_08375 0.84 +0.2 1,837,260 - PS417_08375 0.84 -0.1 1,837,260 - PS417_08375 0.84 -1.2 1,837,260 - PS417_08375 0.84 -0.8 1,837,260 - PS417_08375 0.84 +0.0 1,837,263 + PS417_08375 0.84 -0.9 1,837,263 + PS417_08375 0.84 -2.2 1,837,264 - PS417_08375 0.85 -3.0 1,837,311 + +1.0 1,837,312 - -0.0 1,837,312 - -0.2 1,837,315 + -3.5 1,837,352 + +0.3 1,837,364 + -0.2 1,837,487 + PS417_08380 0.17 +3.0 1,837,487 + PS417_08380 0.17 -0.1 1,837,487 + PS417_08380 0.17 -1.6 1,837,487 + PS417_08380 0.17 +1.1 1,837,488 - PS417_08380 0.17 +1.6 1,837,488 - PS417_08380 0.17 +2.2 1,837,488 - PS417_08380 0.17 +1.6 1,837,488 - PS417_08380 0.17 -1.6 1,837,645 + -0.2 1,837,645 + PS417_08380 0.41 -0.5 1,837,646 - PS417_08380 0.41 -0.4 1,837,646 - PS417_08380 0.41 +1.8 1,837,646 - PS417_08380 0.41 +1.3 1,837,646 - PS417_08380 0.41 +1.6 1,838,013 + -0.5 1,838,014 - -0.2 1,838,089 - +1.0 1,838,159 - +0.7 1,838,159 - +0.2 1,838,159 - +0.6 1,838,251 + -1.2
Or see this region's nucleotide sequence