Strain Fitness in Pseudomonas simiae WCS417 around PS417_06000

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05990 and PS417_06000 are separated by 453 nucleotidesPS417_06000 and PS417_06005 are separated by 83 nucleotides PS417_05990: PS417_05990 - diguanylate cyclase, at 1,332,512 to 1,333,513 _05990 PS417_06000: PS417_06000 - peptide chain release factor 2, at 1,333,967 to 1,334,848 _06000 PS417_06005: PS417_06005 - lysyl-tRNA synthetase, at 1,334,932 to 1,336,431 _06005 Position (kb) 1333 1334 1335Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1332.991 kb on + strand, within PS417_05990at 1333.064 kb on + strand, within PS417_05990at 1333.148 kb on + strand, within PS417_05990at 1333.149 kb on - strand, within PS417_05990at 1333.149 kb on - strand, within PS417_05990at 1333.357 kb on + strand, within PS417_05990at 1333.357 kb on + strand, within PS417_05990at 1333.469 kb on + strandat 1333.469 kb on + strandat 1333.469 kb on + strandat 1333.469 kb on + strandat 1333.469 kb on + strandat 1333.469 kb on + strandat 1333.470 kb on - strandat 1333.470 kb on - strandat 1333.470 kb on - strandat 1333.470 kb on - strandat 1333.483 kb on + strandat 1333.578 kb on + strandat 1333.578 kb on + strandat 1333.578 kb on + strandat 1333.578 kb on + strandat 1333.579 kb on - strandat 1333.579 kb on - strandat 1333.643 kb on + strandat 1333.655 kb on - strandat 1334.846 kb on + strandat 1334.854 kb on + strandat 1334.854 kb on + strandat 1334.854 kb on + strandat 1334.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,332,991 + PS417_05990 0.48 +2.6
1,333,064 + PS417_05990 0.55 -0.5
1,333,148 + PS417_05990 0.63 +1.0
1,333,149 - PS417_05990 0.64 +4.0
1,333,149 - PS417_05990 0.64 -0.1
1,333,357 + PS417_05990 0.84 -0.4
1,333,357 + PS417_05990 0.84 +0.1
1,333,469 + +1.7
1,333,469 + +1.1
1,333,469 + +0.5
1,333,469 + +1.4
1,333,469 + -0.6
1,333,469 + +1.1
1,333,470 - +0.1
1,333,470 - +0.5
1,333,470 - +2.3
1,333,470 - +0.8
1,333,483 + +0.5
1,333,578 + +0.2
1,333,578 + -0.3
1,333,578 + -1.8
1,333,578 + -0.1
1,333,579 - +0.7
1,333,579 - -0.1
1,333,643 + -0.3
1,333,655 - +0.6
1,334,846 + +1.5
1,334,854 + +0.6
1,334,854 + -0.3
1,334,854 + -1.4
1,334,854 + -2.3

Or see this region's nucleotide sequence