Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05630 and PS417_05635 are separated by 156 nucleotides PS417_05635 and PS417_05640 are separated by 129 nucleotides
PS417_05630: PS417_05630 - dihydroorotase, at 1,265,580 to 1,266,626
_05630
PS417_05635: PS417_05635 - membrane protein, at 1,266,783 to 1,267,691
_05635
PS417_05640: PS417_05640 - argininosuccinate synthase, at 1,267,821 to 1,269,038
_05640
Position (kb)
1266
1267
1268 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1266.677 kb on + strand at 1266.677 kb on + strand at 1266.677 kb on + strand at 1266.678 kb on - strand at 1266.735 kb on - strand at 1266.742 kb on + strand at 1266.743 kb on - strand at 1266.743 kb on - strand at 1266.762 kb on + strand at 1266.763 kb on - strand at 1266.795 kb on + strand at 1266.795 kb on + strand at 1266.799 kb on + strand at 1266.799 kb on + strand at 1266.800 kb on - strand at 1266.866 kb on + strand at 1266.866 kb on + strand at 1266.988 kb on - strand, within PS417_05635 at 1267.062 kb on - strand, within PS417_05635 at 1267.079 kb on - strand, within PS417_05635 at 1267.099 kb on + strand, within PS417_05635 at 1267.100 kb on - strand, within PS417_05635 at 1267.100 kb on - strand, within PS417_05635 at 1267.179 kb on + strand, within PS417_05635 at 1267.248 kb on + strand, within PS417_05635 at 1267.406 kb on + strand, within PS417_05635 at 1267.689 kb on + strand at 1267.689 kb on + strand at 1267.690 kb on - strand at 1267.690 kb on - strand at 1267.720 kb on + strand at 1267.780 kb on + strand at 1267.903 kb on - strand at 1267.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,266,677 + +1.6 1,266,677 + +0.3 1,266,677 + -0.3 1,266,678 - +0.3 1,266,735 - -5.1 1,266,742 + -1.2 1,266,743 - -4.8 1,266,743 - -2.7 1,266,762 + +1.1 1,266,763 - +2.8 1,266,795 + -4.7 1,266,795 + -6.2 1,266,799 + -3.2 1,266,799 + -0.7 1,266,800 - -4.3 1,266,866 + -0.1 1,266,866 + -2.7 1,266,988 - PS417_05635 0.23 -3.1 1,267,062 - PS417_05635 0.31 -4.8 1,267,079 - PS417_05635 0.33 -2.6 1,267,099 + PS417_05635 0.35 -4.5 1,267,100 - PS417_05635 0.35 -3.5 1,267,100 - PS417_05635 0.35 -5.0 1,267,179 + PS417_05635 0.44 -5.6 1,267,248 + PS417_05635 0.51 -7.3 1,267,406 + PS417_05635 0.69 -3.2 1,267,689 + +0.3 1,267,689 + -0.7 1,267,690 - +0.4 1,267,690 - -2.5 1,267,720 + -1.6 1,267,780 + -2.8 1,267,903 - -0.6 1,267,903 - -2.8
Or see this region's nucleotide sequence