Strain Fitness in Pseudomonas simiae WCS417 around PS417_27990

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27985 and PS417_27990 are separated by 14 nucleotidesPS417_27990 and PS417_27995 are separated by 12 nucleotides PS417_27985: PS417_27985 - type VI secretion protein ImpA, at 6,038,483 to 6,040,423 _27985 PS417_27990: PS417_27990 - hypothetical protein, at 6,040,438 to 6,040,872 _27990 PS417_27995: PS417_27995 - type IV secretion protein Rhs, at 6,040,885 to 6,045,279 _27995 Position (kb) 6040 6041Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 6039.458 kb on + strandat 6039.459 kb on - strand, within PS417_27985at 6039.668 kb on + strand, within PS417_27985at 6039.668 kb on + strand, within PS417_27985at 6039.669 kb on - strand, within PS417_27985at 6039.669 kb on - strand, within PS417_27985at 6039.839 kb on + strand, within PS417_27985at 6039.840 kb on - strand, within PS417_27985at 6039.980 kb on + strand, within PS417_27985at 6039.980 kb on + strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.982 kb on + strand, within PS417_27985at 6040.274 kb on + strandat 6040.274 kb on + strandat 6040.274 kb on + strandat 6040.275 kb on - strandat 6040.507 kb on - strand, within PS417_27990at 6040.637 kb on - strand, within PS417_27990at 6040.754 kb on + strand, within PS417_27990at 6040.787 kb on - strand, within PS417_27990at 6040.884 kb on + strandat 6040.884 kb on + strandat 6040.885 kb on - strandat 6040.885 kb on - strandat 6040.992 kb on + strandat 6041.700 kb on + strand, within PS417_27995at 6041.729 kb on + strand, within PS417_27995at 6041.738 kb on - strand, within PS417_27995

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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6,039,458 + -0.7
6,039,459 - PS417_27985 0.50 -0.1
6,039,668 + PS417_27985 0.61 -0.7
6,039,668 + PS417_27985 0.61 -1.0
6,039,669 - PS417_27985 0.61 +1.4
6,039,669 - PS417_27985 0.61 -2.1
6,039,839 + PS417_27985 0.70 -0.5
6,039,840 - PS417_27985 0.70 +0.4
6,039,980 + PS417_27985 0.77 -0.1
6,039,980 + PS417_27985 0.77 +0.7
6,039,981 - PS417_27985 0.77 -0.1
6,039,981 - PS417_27985 0.77 -0.2
6,039,981 - PS417_27985 0.77 -0.3
6,039,982 + PS417_27985 0.77 +0.6
6,040,274 + +0.7
6,040,274 + -1.6
6,040,274 + +0.3
6,040,275 - -0.2
6,040,507 - PS417_27990 0.16 +0.7
6,040,637 - PS417_27990 0.46 -5.0
6,040,754 + PS417_27990 0.73 -0.2
6,040,787 - PS417_27990 0.80 -1.6
6,040,884 + +0.7
6,040,884 + +1.1
6,040,885 - -1.0
6,040,885 - +1.6
6,040,992 + -0.4
6,041,700 + PS417_27995 0.19 +0.7
6,041,729 + PS417_27995 0.19 +0.4
6,041,738 - PS417_27995 0.19 +0.3

Or see this region's nucleotide sequence