Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26295 and PS417_26300 are separated by 360 nucleotides PS417_26300 and PS417_26305 are separated by 106 nucleotides
PS417_26295: PS417_26295 - gamma-butyrobetaine dioxygenase, at 5,681,932 to 5,683,092
_26295
PS417_26300: PS417_26300 - hypothetical protein, at 5,683,453 to 5,683,716
_26300
PS417_26305: PS417_26305 - AraC family transcriptional regulator, at 5,683,823 to 5,684,926
_26305
Position (kb)
5683
5684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5683.042 kb on + strand at 5683.261 kb on + strand at 5683.262 kb on - strand at 5683.318 kb on - strand at 5683.320 kb on + strand at 5683.321 kb on - strand at 5683.329 kb on + strand at 5683.330 kb on - strand at 5683.618 kb on + strand, within PS417_26300 at 5683.618 kb on + strand, within PS417_26300 at 5683.618 kb on + strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.717 kb on + strand at 5683.825 kb on - strand at 5683.833 kb on - strand at 5683.902 kb on - strand at 5683.955 kb on + strand, within PS417_26305 at 5683.986 kb on + strand, within PS417_26305 at 5684.110 kb on - strand, within PS417_26305 at 5684.112 kb on + strand, within PS417_26305 at 5684.182 kb on - strand, within PS417_26305
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,683,042 + +0.0 5,683,261 + +0.7 5,683,262 - +0.9 5,683,318 - -0.7 5,683,320 + -2.5 5,683,321 - +1.3 5,683,329 + -1.0 5,683,330 - -2.2 5,683,618 + PS417_26300 0.62 -1.9 5,683,618 + PS417_26300 0.62 +0.3 5,683,618 + PS417_26300 0.62 -1.2 5,683,619 - PS417_26300 0.63 -1.0 5,683,619 - PS417_26300 0.63 -0.2 5,683,619 - PS417_26300 0.63 +0.3 5,683,619 - PS417_26300 0.63 -0.9 5,683,717 + +0.1 5,683,825 - -0.8 5,683,833 - -0.2 5,683,902 - -1.5 5,683,955 + PS417_26305 0.12 -2.2 5,683,986 + PS417_26305 0.15 -0.8 5,684,110 - PS417_26305 0.26 +0.1 5,684,112 + PS417_26305 0.26 +2.7 5,684,182 - PS417_26305 0.33 -0.7
Or see this region's nucleotide sequence