Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23660 and PS417_23665 are separated by 41 nucleotides PS417_23665 and PS417_23670 are separated by 12 nucleotides
PS417_23660: PS417_23660 - Catechol 1,2-dioxygenase (EC 1.13.11.1) <small>(from data)</small>, at 5,116,586 to 5,117,515
_23660
PS417_23665: PS417_23665 - Muconolactone isomerase (EC 5.3.3.4) <small>(from data)</small>, at 5,117,557 to 5,117,847
_23665
PS417_23670: PS417_23670 - Muconate cycloisomerase (EC 5.5.1.1) <small>(from data)</small>, at 5,117,860 to 5,118,987
_23670
Position (kb) 5117
5118 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5116.587 kb on + strand at 5117.029 kb on - strand, within PS417_23660 at 5117.029 kb on - strand, within PS417_23660 at 5117.029 kb on - strand, within PS417_23660 at 5117.032 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.187 kb on + strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.188 kb on - strand, within PS417_23660 at 5117.268 kb on + strand, within PS417_23660 at 5117.269 kb on - strand, within PS417_23660 at 5117.322 kb on - strand, within PS417_23660 at 5117.334 kb on + strand at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660 at 5117.335 kb on - strand, within PS417_23660 at 5117.535 kb on - strand at 5117.538 kb on + strand at 5117.538 kb on + strand at 5117.539 kb on - strand at 5117.539 kb on - strand at 5117.539 kb on - strand at 5117.539 kb on - strand at 5117.541 kb on + strand at 5117.541 kb on + strand at 5117.541 kb on + strand at 5117.621 kb on + strand, within PS417_23665 at 5117.621 kb on + strand, within PS417_23665 at 5117.621 kb on + strand, within PS417_23665 at 5117.691 kb on - strand, within PS417_23665 at 5117.691 kb on - strand, within PS417_23665 at 5117.691 kb on - strand, within PS417_23665 at 5117.861 kb on + strand at 5117.862 kb on - strand at 5118.309 kb on + strand, within PS417_23670 at 5118.310 kb on - strand, within PS417_23670 at 5118.310 kb on - strand, within PS417_23670 at 5118.696 kb on + strand, within PS417_23670 at 5118.697 kb on - strand, within PS417_23670 at 5118.789 kb on + strand, within PS417_23670 at 5118.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,116,587 + -3.1 5,117,029 - PS417_23660 0.48 -0.5 5,117,029 - PS417_23660 0.48 -0.4 5,117,029 - PS417_23660 0.48 +0.3 5,117,032 + PS417_23660 0.48 -0.5 5,117,187 + PS417_23660 0.65 -0.1 5,117,187 + PS417_23660 0.65 +0.2 5,117,187 + PS417_23660 0.65 +1.3 5,117,188 - PS417_23660 0.65 -0.1 5,117,188 - PS417_23660 0.65 -1.2 5,117,188 - PS417_23660 0.65 -0.2 5,117,188 - PS417_23660 0.65 -1.2 5,117,268 + PS417_23660 0.73 +0.2 5,117,269 - PS417_23660 0.73 -0.1 5,117,322 - PS417_23660 0.79 +0.0 5,117,334 + +0.4 5,117,335 - PS417_23660 0.81 +0.6 5,117,335 - PS417_23660 0.81 -0.4 5,117,335 - PS417_23660 0.81 -0.1 5,117,335 - PS417_23660 0.81 +1.1 5,117,535 - -0.3 5,117,538 + +0.9 5,117,538 + -0.1 5,117,539 - +0.3 5,117,539 - -1.0 5,117,539 - -0.5 5,117,539 - -0.1 5,117,541 + +0.5 5,117,541 + +0.2 5,117,541 + +1.0 5,117,621 + PS417_23665 0.22 +1.4 5,117,621 + PS417_23665 0.22 -0.2 5,117,621 + PS417_23665 0.22 +1.1 5,117,691 - PS417_23665 0.46 -2.0 5,117,691 - PS417_23665 0.46 +1.0 5,117,691 - PS417_23665 0.46 +0.9 5,117,861 + -1.1 5,117,862 - -0.2 5,118,309 + PS417_23670 0.40 -0.2 5,118,310 - PS417_23670 0.40 +0.7 5,118,310 - PS417_23670 0.40 +0.3 5,118,696 + PS417_23670 0.74 -0.0 5,118,697 - PS417_23670 0.74 +0.3 5,118,789 + PS417_23670 0.82 +0.8 5,118,813 - +0.2
Or see this region's nucleotide sequence