Strain Fitness in Pseudomonas simiae WCS417 around PS417_20850

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20845 and PS417_20850 are separated by 157 nucleotidesPS417_20850 and PS417_20855 are separated by 20 nucleotidesPS417_20855 and PS417_20860 are separated by 453 nucleotides PS417_20845: PS417_20845 - hypothetical protein, at 4,525,805 to 4,526,851 _20845 PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970 _20850 PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422 _20855 PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039 _20860 Position (kb) 4527 4528 4529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4526.188 kb on - strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.214 kb on + strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.215 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.230 kb on - strand, within PS417_20845at 4526.475 kb on + strand, within PS417_20845at 4526.608 kb on + strand, within PS417_20845at 4526.643 kb on + strandat 4526.643 kb on + strand, within PS417_20845at 4526.750 kb on + strandat 4526.750 kb on + strandat 4526.754 kb on + strandat 4526.822 kb on - strandat 4526.822 kb on - strandat 4526.822 kb on - strandat 4526.867 kb on + strandat 4526.867 kb on + strandat 4526.867 kb on + strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.868 kb on - strandat 4526.872 kb on - strandat 4526.943 kb on + strandat 4526.943 kb on + strandat 4526.944 kb on - strandat 4526.944 kb on - strandat 4526.944 kb on - strandat 4526.957 kb on + strandat 4526.957 kb on + strandat 4526.958 kb on - strandat 4526.958 kb on - strandat 4527.001 kb on + strandat 4527.006 kb on - strandat 4527.040 kb on + strandat 4527.074 kb on - strandat 4527.074 kb on - strandat 4527.083 kb on - strandat 4527.083 kb on - strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.115 kb on + strandat 4527.116 kb on - strandat 4527.116 kb on - strandat 4527.344 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.392 kb on - strand, within PS417_20850at 4527.427 kb on + strand, within PS417_20850at 4527.428 kb on - strand, within PS417_20850at 4527.730 kb on + strand, within PS417_20850at 4527.730 kb on + strand, within PS417_20850at 4527.731 kb on - strand, within PS417_20850at 4527.991 kb on + strand, within PS417_20850at 4527.991 kb on + strand, within PS417_20850at 4527.991 kb on + strand, within PS417_20850at 4527.992 kb on - strand, within PS417_20850at 4527.992 kb on - strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.105 kb on + strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.106 kb on - strand, within PS417_20850at 4528.173 kb on - strand, within PS417_20850at 4528.173 kb on - strand, within PS417_20850at 4528.249 kb on - strand, within PS417_20850at 4528.571 kb on - strand, within PS417_20850at 4528.571 kb on - strand, within PS417_20850at 4528.603 kb on + strand, within PS417_20850at 4528.655 kb on + strand, within PS417_20850at 4528.656 kb on - strand, within PS417_20850at 4528.952 kb on + strandat 4528.971 kb on - strandat 4529.047 kb on + strand, within PS417_20855at 4529.048 kb on - strand, within PS417_20855at 4529.711 kb on - strandat 4529.773 kb on + strandat 4529.774 kb on - strandat 4529.774 kb on - strandat 4529.784 kb on - strandat 4529.932 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,526,188 - PS417_20845 0.37 +0.8
4,526,214 + PS417_20845 0.39 +3.4
4,526,214 + PS417_20845 0.39 -1.5
4,526,214 + PS417_20845 0.39 -2.0
4,526,215 - PS417_20845 0.39 -1.6
4,526,215 - PS417_20845 0.39 +0.0
4,526,230 - PS417_20845 0.41 +0.3
4,526,230 - PS417_20845 0.41 -2.5
4,526,230 - PS417_20845 0.41 -0.4
4,526,475 + PS417_20845 0.64 +0.7
4,526,608 + PS417_20845 0.77 -0.8
4,526,643 + +0.4
4,526,643 + PS417_20845 0.80 -0.0
4,526,750 + -0.1
4,526,750 + -0.3
4,526,754 + +2.6
4,526,822 - -0.6
4,526,822 - -0.0
4,526,822 - -0.4
4,526,867 + -0.2
4,526,867 + -1.2
4,526,867 + -1.9
4,526,868 - +0.7
4,526,868 - +0.3
4,526,868 - +0.0
4,526,872 - +1.1
4,526,943 + -0.2
4,526,943 + +0.5
4,526,944 - +0.9
4,526,944 - +1.3
4,526,944 - +0.2
4,526,957 + -0.2
4,526,957 + -0.1
4,526,958 - -1.5
4,526,958 - -0.5
4,527,001 + +0.3
4,527,006 - +1.3
4,527,040 + +0.4
4,527,074 - +1.3
4,527,074 - -0.0
4,527,083 - -0.7
4,527,083 - +0.4
4,527,115 + +0.1
4,527,115 + -0.4
4,527,115 + -0.4
4,527,115 + -1.0
4,527,115 + +0.0
4,527,115 + +0.4
4,527,115 + +1.4
4,527,115 + +0.4
4,527,116 - -1.1
4,527,116 - +1.6
4,527,344 - PS417_20850 0.17 -0.4
4,527,392 - PS417_20850 0.20 -0.6
4,527,392 - PS417_20850 0.20 +1.6
4,527,392 - PS417_20850 0.20 +1.0
4,527,427 + PS417_20850 0.21 +0.5
4,527,428 - PS417_20850 0.21 -0.4
4,527,730 + PS417_20850 0.37 -0.2
4,527,730 + PS417_20850 0.37 -1.9
4,527,731 - PS417_20850 0.37 +0.2
4,527,991 + PS417_20850 0.50 -1.2
4,527,991 + PS417_20850 0.50 -0.2
4,527,991 + PS417_20850 0.50 -1.2
4,527,992 - PS417_20850 0.50 -0.9
4,527,992 - PS417_20850 0.50 -1.1
4,528,105 + PS417_20850 0.56 -0.7
4,528,105 + PS417_20850 0.56 -0.6
4,528,105 + PS417_20850 0.56 +0.2
4,528,106 - PS417_20850 0.56 -2.5
4,528,106 - PS417_20850 0.56 -0.1
4,528,106 - PS417_20850 0.56 -2.7
4,528,106 - PS417_20850 0.56 +0.1
4,528,173 - PS417_20850 0.59 -1.6
4,528,173 - PS417_20850 0.59 -0.1
4,528,249 - PS417_20850 0.63 +0.5
4,528,571 - PS417_20850 0.80 -2.0
4,528,571 - PS417_20850 0.80 +0.2
4,528,603 + PS417_20850 0.81 +0.4
4,528,655 + PS417_20850 0.84 +0.1
4,528,656 - PS417_20850 0.84 +0.4
4,528,952 + +0.7
4,528,971 - +0.7
4,529,047 + PS417_20855 0.13 -3.1
4,529,048 - PS417_20855 0.13 -1.4
4,529,711 - -3.2
4,529,773 + -1.4
4,529,774 - -0.2
4,529,774 - -0.4
4,529,784 - +0.0
4,529,932 + -1.3

Or see this region's nucleotide sequence