Strain Fitness in Pseudomonas simiae WCS417 around PS417_11290

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11285 and PS417_11290 overlap by 8 nucleotidesPS417_11290 and PS417_11295 overlap by 4 nucleotides PS417_11285: PS417_11285 - general secretion pathway protein GspL, at 2,415,251 to 2,416,312 _11285 PS417_11290: PS417_11290 - general secretion pathway protein GspM, at 2,416,305 to 2,416,817 _11290 PS417_11295: PS417_11295 - general secretion pathway protein GspD, at 2,416,814 to 2,419,108 _11295 Position (kb) 2416 2417Strain fitness (log2 ratio) -2 -1 0 1at 2416.294 kb on - strandat 2416.484 kb on - strand, within PS417_11290at 2416.949 kb on - strandat 2417.082 kb on + strand, within PS417_11295at 2417.226 kb on - strand, within PS417_11295at 2417.369 kb on - strand, within PS417_11295at 2417.784 kb on - strand, within PS417_11295at 2417.784 kb on - strand, within PS417_11295

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,416,294 - -0.3
2,416,484 - PS417_11290 0.35 +1.3
2,416,949 - -0.4
2,417,082 + PS417_11295 0.12 -0.1
2,417,226 - PS417_11295 0.18 +0.2
2,417,369 - PS417_11295 0.24 +0.1
2,417,784 - PS417_11295 0.42 -2.1
2,417,784 - PS417_11295 0.42 +0.1

Or see this region's nucleotide sequence