Strain Fitness in Pseudomonas simiae WCS417 around PS417_16155

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16150 and PS417_16155 are separated by 53 nucleotidesPS417_16155 and PS417_16160 overlap by 4 nucleotides PS417_16150: PS417_16150 - ABC transporter substrate-binding protein, at 3,541,175 to 3,542,233 _16150 PS417_16155: PS417_16155 - monooxygenase, at 3,542,287 to 3,543,612 _16155 PS417_16160: PS417_16160 - ABC transporter substrate-binding protein, at 3,543,609 to 3,544,547 _16160 Position (kb) 3542 3543 3544Strain fitness (log2 ratio) -2 -1 0 1 2at 3542.225 kb on + strandat 3542.225 kb on + strandat 3542.225 kb on + strandat 3542.248 kb on - strandat 3542.248 kb on - strandat 3542.248 kb on - strandat 3542.268 kb on + strandat 3542.501 kb on - strand, within PS417_16155at 3542.501 kb on - strand, within PS417_16155at 3543.213 kb on + strand, within PS417_16155at 3543.214 kb on - strand, within PS417_16155at 3543.287 kb on + strand, within PS417_16155at 3543.287 kb on + strand, within PS417_16155at 3543.288 kb on - strand, within PS417_16155at 3543.341 kb on + strand, within PS417_16155at 3543.500 kb on + strandat 3543.500 kb on + strandat 3543.680 kb on - strandat 3543.680 kb on - strandat 3543.739 kb on + strand, within PS417_16160at 3543.932 kb on - strand, within PS417_16160at 3544.256 kb on - strand, within PS417_16160at 3544.259 kb on - strand, within PS417_16160at 3544.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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3,542,225 + +0.4
3,542,225 + +0.4
3,542,225 + +1.0
3,542,248 - +1.1
3,542,248 - -0.5
3,542,248 - +0.2
3,542,268 + -0.3
3,542,501 - PS417_16155 0.16 -2.4
3,542,501 - PS417_16155 0.16 +0.1
3,543,213 + PS417_16155 0.70 -0.3
3,543,214 - PS417_16155 0.70 -0.4
3,543,287 + PS417_16155 0.75 -1.3
3,543,287 + PS417_16155 0.75 -0.5
3,543,288 - PS417_16155 0.75 +0.3
3,543,341 + PS417_16155 0.79 -1.3
3,543,500 + -0.7
3,543,500 + +0.5
3,543,680 - +0.6
3,543,680 - -0.1
3,543,739 + PS417_16160 0.14 +0.7
3,543,932 - PS417_16160 0.34 +2.3
3,544,256 - PS417_16160 0.69 -0.4
3,544,259 - PS417_16160 0.69 -1.7
3,544,259 - -1.5

Or see this region's nucleotide sequence