Strain Fitness in Pseudomonas simiae WCS417 around PS417_16075

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_16070 and PS417_16075 are separated by 381 nucleotidesPS417_16075 and PS417_16080 are separated by 1 nucleotides PS417_16070: PS417_16070 - TonB-dependent receptor, at 3,521,565 to 3,524,078 _16070 PS417_16075: PS417_16075 - diguanylate cyclase, at 3,524,460 to 3,525,374 _16075 PS417_16080: PS417_16080 - AraC family transcriptional regulator, at 3,525,376 to 3,526,413 _16080 Position (kb) 3524 3525 3526Strain fitness (log2 ratio) -1 0 1 2at 3524.823 kb on + strand, within PS417_16075at 3524.824 kb on - strand, within PS417_16075at 3524.824 kb on - strand, within PS417_16075at 3524.934 kb on + strand, within PS417_16075at 3525.643 kb on + strand, within PS417_16080at 3525.779 kb on - strand, within PS417_16080at 3525.932 kb on - strand, within PS417_16080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
remove
3,524,823 + PS417_16075 0.40 +0.2
3,524,824 - PS417_16075 0.40 +1.8
3,524,824 - PS417_16075 0.40 +0.4
3,524,934 + PS417_16075 0.52 +0.1
3,525,643 + PS417_16080 0.26 +0.5
3,525,779 - PS417_16080 0.39 -0.3
3,525,932 - PS417_16080 0.54 +0.1

Or see this region's nucleotide sequence