Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13015 and PS417_13020 are separated by 308 nucleotides PS417_13020 and PS417_13025 are separated by 151 nucleotides PS417_13025 and PS417_13030 are separated by 173 nucleotides
PS417_13015: PS417_13015 - 6-hydroxynicotinate 3-monooxygenase, at 2,842,749 to 2,843,882
_13015
PS417_13020: PS417_13020 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 2,844,191 to 2,845,243
_13020
PS417_13025: PS417_13025 - MarR family transcriptional regulator, at 2,845,395 to 2,845,829
_13025
PS417_13030: PS417_13030 - (2Fe-2S)-binding protein, at 2,846,003 to 2,846,485
_13030
Position (kb)
2844
2845
2846 Strain fitness (log2 ratio)
-2
-1
0
1 at 2843.221 kb on + strand, within PS417_13015 at 2843.222 kb on - strand, within PS417_13015 at 2843.222 kb on - strand, within PS417_13015 at 2843.224 kb on + strand, within PS417_13015 at 2843.224 kb on + strand, within PS417_13015 at 2843.224 kb on + strand, within PS417_13015 at 2843.227 kb on + strand, within PS417_13015 at 2843.228 kb on - strand, within PS417_13015 at 2843.252 kb on - strand, within PS417_13015 at 2843.252 kb on - strand, within PS417_13015 at 2843.252 kb on - strand, within PS417_13015 at 2843.368 kb on + strand, within PS417_13015 at 2843.447 kb on - strand, within PS417_13015 at 2843.590 kb on + strand, within PS417_13015 at 2843.591 kb on - strand, within PS417_13015 at 2843.785 kb on + strand at 2843.785 kb on + strand at 2843.786 kb on - strand at 2843.815 kb on - strand at 2844.704 kb on + strand, within PS417_13020 at 2844.854 kb on + strand, within PS417_13020 at 2844.854 kb on + strand at 2844.855 kb on - strand, within PS417_13020 at 2844.930 kb on - strand, within PS417_13020 at 2844.941 kb on + strand, within PS417_13020 at 2844.941 kb on + strand, within PS417_13020 at 2844.941 kb on + strand, within PS417_13020 at 2844.942 kb on - strand, within PS417_13020 at 2844.942 kb on - strand, within PS417_13020 at 2844.942 kb on - strand, within PS417_13020 at 2844.951 kb on - strand, within PS417_13020 at 2844.972 kb on - strand, within PS417_13020 at 2845.150 kb on + strand at 2845.175 kb on + strand at 2845.176 kb on - strand at 2845.176 kb on - strand at 2845.176 kb on - strand at 2845.866 kb on + strand at 2845.896 kb on - strand at 2845.896 kb on - strand at 2845.967 kb on + strand at 2845.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,843,221 + PS417_13015 0.42 +0.1 2,843,222 - PS417_13015 0.42 -1.7 2,843,222 - PS417_13015 0.42 +0.5 2,843,224 + PS417_13015 0.42 +0.9 2,843,224 + PS417_13015 0.42 -0.1 2,843,224 + PS417_13015 0.42 -1.0 2,843,227 + PS417_13015 0.42 -0.9 2,843,228 - PS417_13015 0.42 +0.6 2,843,252 - PS417_13015 0.44 -0.6 2,843,252 - PS417_13015 0.44 +1.0 2,843,252 - PS417_13015 0.44 -0.2 2,843,368 + PS417_13015 0.55 +0.2 2,843,447 - PS417_13015 0.62 -0.2 2,843,590 + PS417_13015 0.74 -2.3 2,843,591 - PS417_13015 0.74 -0.1 2,843,785 + -1.9 2,843,785 + +0.4 2,843,786 - +0.1 2,843,815 - -1.7 2,844,704 + PS417_13020 0.49 -1.0 2,844,854 + PS417_13020 0.63 -1.9 2,844,854 + -1.2 2,844,855 - PS417_13020 0.63 -1.8 2,844,930 - PS417_13020 0.70 -0.8 2,844,941 + PS417_13020 0.71 -0.0 2,844,941 + PS417_13020 0.71 -0.9 2,844,941 + PS417_13020 0.71 -0.3 2,844,942 - PS417_13020 0.71 -0.5 2,844,942 - PS417_13020 0.71 -0.8 2,844,942 - PS417_13020 0.71 -0.8 2,844,951 - PS417_13020 0.72 -0.3 2,844,972 - PS417_13020 0.74 +0.2 2,845,150 + -1.8 2,845,175 + +0.4 2,845,176 - -1.3 2,845,176 - -1.6 2,845,176 - +0.2 2,845,866 + -0.4 2,845,896 - +0.6 2,845,896 - -0.1 2,845,967 + -0.5 2,845,974 + -1.0
Or see this region's nucleotide sequence