Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07300 and PS417_07305 are separated by 55 nucleotides PS417_07305 and PS417_07310 are separated by 34 nucleotides PS417_07310 and PS417_07315 are separated by 104 nucleotides
PS417_07300: PS417_07300 - LysR family transcriptional regulator, at 1,610,682 to 1,611,560
_07300
PS417_07305: PS417_07305 - 3-beta hydroxysteroid dehydrogenase, at 1,611,616 to 1,612,230
_07305
PS417_07310: PS417_07310 - beta-lactamase, at 1,612,265 to 1,613,131
_07310
PS417_07315: PS417_07315 - LysR family transcriptional regulator, at 1,613,236 to 1,614,141
_07315
Position (kb)
1612
1613
1614 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1611.466 kb on - strand, within PS417_07300 at 1611.468 kb on + strand, within PS417_07300 at 1611.468 kb on + strand, within PS417_07300 at 1611.469 kb on - strand, within PS417_07300 at 1611.620 kb on + strand at 1611.686 kb on + strand, within PS417_07305 at 1611.687 kb on - strand, within PS417_07305 at 1611.687 kb on - strand, within PS417_07305 at 1612.153 kb on - strand at 1612.243 kb on + strand at 1612.244 kb on - strand at 1612.410 kb on + strand, within PS417_07310 at 1612.411 kb on - strand, within PS417_07310 at 1612.860 kb on + strand, within PS417_07310 at 1612.860 kb on + strand, within PS417_07310 at 1612.861 kb on - strand, within PS417_07310 at 1612.861 kb on - strand, within PS417_07310 at 1612.864 kb on - strand, within PS417_07310 at 1612.864 kb on - strand, within PS417_07310 at 1612.887 kb on + strand, within PS417_07310 at 1612.887 kb on + strand, within PS417_07310 at 1612.888 kb on - strand, within PS417_07310 at 1612.891 kb on + strand, within PS417_07310 at 1613.041 kb on - strand, within PS417_07310 at 1613.041 kb on - strand, within PS417_07310 at 1613.169 kb on + strand at 1613.169 kb on + strand at 1613.169 kb on + strand at 1613.170 kb on - strand at 1613.170 kb on - strand at 1613.209 kb on + strand at 1613.331 kb on - strand at 1613.341 kb on + strand, within PS417_07315 at 1613.533 kb on - strand, within PS417_07315 at 1613.625 kb on + strand, within PS417_07315 at 1613.816 kb on - strand, within PS417_07315 at 1613.884 kb on - strand, within PS417_07315 at 1613.957 kb on - strand, within PS417_07315 at 1613.972 kb on - strand, within PS417_07315 at 1613.972 kb on - strand, within PS417_07315 at 1614.034 kb on + strand, within PS417_07315 at 1614.034 kb on + strand, within PS417_07315
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 1,611,466 - PS417_07300 0.89 +0.3 1,611,468 + PS417_07300 0.89 +2.0 1,611,468 + PS417_07300 0.89 +0.3 1,611,469 - PS417_07300 0.90 -0.4 1,611,620 + +1.3 1,611,686 + PS417_07305 0.11 -1.3 1,611,687 - PS417_07305 0.12 -0.1 1,611,687 - PS417_07305 0.12 +0.4 1,612,153 - +0.5 1,612,243 + +2.3 1,612,244 - -0.6 1,612,410 + PS417_07310 0.17 -0.4 1,612,411 - PS417_07310 0.17 -2.4 1,612,860 + PS417_07310 0.69 -1.3 1,612,860 + PS417_07310 0.69 -1.3 1,612,861 - PS417_07310 0.69 -0.0 1,612,861 - PS417_07310 0.69 +0.3 1,612,864 - PS417_07310 0.69 -1.1 1,612,864 - PS417_07310 0.69 +0.0 1,612,887 + PS417_07310 0.72 -2.0 1,612,887 + PS417_07310 0.72 -0.7 1,612,888 - PS417_07310 0.72 -2.2 1,612,891 + PS417_07310 0.72 +0.0 1,613,041 - PS417_07310 0.90 +0.2 1,613,041 - PS417_07310 0.90 -0.4 1,613,169 + -0.9 1,613,169 + +0.6 1,613,169 + -0.4 1,613,170 - -0.0 1,613,170 - +0.4 1,613,209 + -0.2 1,613,331 - -0.1 1,613,341 + PS417_07315 0.12 -1.0 1,613,533 - PS417_07315 0.33 -1.0 1,613,625 + PS417_07315 0.43 -0.5 1,613,816 - PS417_07315 0.64 +1.9 1,613,884 - PS417_07315 0.72 +0.2 1,613,957 - PS417_07315 0.80 +0.8 1,613,972 - PS417_07315 0.81 +0.2 1,613,972 - PS417_07315 0.81 +0.9 1,614,034 + PS417_07315 0.88 +1.2 1,614,034 + PS417_07315 0.88 -1.1
Or see this region's nucleotide sequence