Strain Fitness in Pseudomonas simiae WCS417 around PS417_07310

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07300 and PS417_07305 are separated by 55 nucleotidesPS417_07305 and PS417_07310 are separated by 34 nucleotidesPS417_07310 and PS417_07315 are separated by 104 nucleotides PS417_07300: PS417_07300 - LysR family transcriptional regulator, at 1,610,682 to 1,611,560 _07300 PS417_07305: PS417_07305 - 3-beta hydroxysteroid dehydrogenase, at 1,611,616 to 1,612,230 _07305 PS417_07310: PS417_07310 - beta-lactamase, at 1,612,265 to 1,613,131 _07310 PS417_07315: PS417_07315 - LysR family transcriptional regulator, at 1,613,236 to 1,614,141 _07315 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -2 -1 0 1 2at 1611.466 kb on - strand, within PS417_07300at 1611.468 kb on + strand, within PS417_07300at 1611.468 kb on + strand, within PS417_07300at 1611.469 kb on - strand, within PS417_07300at 1611.620 kb on + strandat 1611.686 kb on + strand, within PS417_07305at 1611.687 kb on - strand, within PS417_07305at 1611.687 kb on - strand, within PS417_07305at 1612.153 kb on - strandat 1612.243 kb on + strandat 1612.244 kb on - strandat 1612.410 kb on + strand, within PS417_07310at 1612.411 kb on - strand, within PS417_07310at 1612.860 kb on + strand, within PS417_07310at 1612.860 kb on + strand, within PS417_07310at 1612.861 kb on - strand, within PS417_07310at 1612.861 kb on - strand, within PS417_07310at 1612.864 kb on - strand, within PS417_07310at 1612.864 kb on - strand, within PS417_07310at 1612.887 kb on + strand, within PS417_07310at 1612.887 kb on + strand, within PS417_07310at 1612.888 kb on - strand, within PS417_07310at 1612.891 kb on + strand, within PS417_07310at 1613.041 kb on - strand, within PS417_07310at 1613.041 kb on - strand, within PS417_07310at 1613.169 kb on + strandat 1613.169 kb on + strandat 1613.169 kb on + strandat 1613.170 kb on - strandat 1613.170 kb on - strandat 1613.209 kb on + strandat 1613.331 kb on - strandat 1613.341 kb on + strand, within PS417_07315at 1613.533 kb on - strand, within PS417_07315at 1613.625 kb on + strand, within PS417_07315at 1613.816 kb on - strand, within PS417_07315at 1613.884 kb on - strand, within PS417_07315at 1613.957 kb on - strand, within PS417_07315at 1613.972 kb on - strand, within PS417_07315at 1613.972 kb on - strand, within PS417_07315at 1614.034 kb on + strand, within PS417_07315at 1614.034 kb on + strand, within PS417_07315

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,611,466 - PS417_07300 0.89 +0.3
1,611,468 + PS417_07300 0.89 +2.0
1,611,468 + PS417_07300 0.89 +0.3
1,611,469 - PS417_07300 0.90 -0.4
1,611,620 + +1.3
1,611,686 + PS417_07305 0.11 -1.3
1,611,687 - PS417_07305 0.12 -0.1
1,611,687 - PS417_07305 0.12 +0.4
1,612,153 - +0.5
1,612,243 + +2.3
1,612,244 - -0.6
1,612,410 + PS417_07310 0.17 -0.4
1,612,411 - PS417_07310 0.17 -2.4
1,612,860 + PS417_07310 0.69 -1.3
1,612,860 + PS417_07310 0.69 -1.3
1,612,861 - PS417_07310 0.69 -0.0
1,612,861 - PS417_07310 0.69 +0.3
1,612,864 - PS417_07310 0.69 -1.1
1,612,864 - PS417_07310 0.69 +0.0
1,612,887 + PS417_07310 0.72 -2.0
1,612,887 + PS417_07310 0.72 -0.7
1,612,888 - PS417_07310 0.72 -2.2
1,612,891 + PS417_07310 0.72 +0.0
1,613,041 - PS417_07310 0.90 +0.2
1,613,041 - PS417_07310 0.90 -0.4
1,613,169 + -0.9
1,613,169 + +0.6
1,613,169 + -0.4
1,613,170 - -0.0
1,613,170 - +0.4
1,613,209 + -0.2
1,613,331 - -0.1
1,613,341 + PS417_07315 0.12 -1.0
1,613,533 - PS417_07315 0.33 -1.0
1,613,625 + PS417_07315 0.43 -0.5
1,613,816 - PS417_07315 0.64 +1.9
1,613,884 - PS417_07315 0.72 +0.2
1,613,957 - PS417_07315 0.80 +0.8
1,613,972 - PS417_07315 0.81 +0.2
1,613,972 - PS417_07315 0.81 +0.9
1,614,034 + PS417_07315 0.88 +1.2
1,614,034 + PS417_07315 0.88 -1.1

Or see this region's nucleotide sequence