Strain Fitness in Pseudomonas simiae WCS417 around PS417_00600

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00595 and PS417_00600 are separated by 45 nucleotidesPS417_00600 and PS417_00605 are separated by 18 nucleotides PS417_00595: PS417_00595 - chemotaxis protein, at 119,360 to 121,240 _00595 PS417_00600: PS417_00600 - polyketide cyclase, at 121,286 to 121,744 _00600 PS417_00605: PS417_00605 - peptide transporter, at 121,763 to 125,140 _00605 Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 120.313 kb on - strand, within PS417_00595at 120.382 kb on - strand, within PS417_00595at 120.382 kb on - strand, within PS417_00595at 120.388 kb on + strand, within PS417_00595at 120.389 kb on - strand, within PS417_00595at 120.453 kb on + strand, within PS417_00595at 120.454 kb on - strand, within PS417_00595at 120.475 kb on + strand, within PS417_00595at 120.476 kb on - strand, within PS417_00595at 120.566 kb on - strand, within PS417_00595at 121.470 kb on + strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.471 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.538 kb on - strand, within PS417_00600at 121.594 kb on + strandat 121.595 kb on - strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.643 kb on + strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.644 kb on - strand, within PS417_00600at 121.691 kb on + strand, within PS417_00600at 121.723 kb on + strandat 121.744 kb on + strandat 121.744 kb on + strandat 121.745 kb on - strandat 121.788 kb on + strandat 121.967 kb on + strandat 121.968 kb on - strandat 122.038 kb on - strandat 122.281 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.364 kb on + strand, within PS417_00605at 122.365 kb on - strand, within PS417_00605at 122.365 kb on - strand, within PS417_00605at 122.397 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.404 kb on - strand, within PS417_00605at 122.486 kb on + strand, within PS417_00605at 122.486 kb on + strand, within PS417_00605at 122.487 kb on - strand, within PS417_00605at 122.540 kb on + strand, within PS417_00605at 122.540 kb on + strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.541 kb on - strand, within PS417_00605at 122.563 kb on + strand, within PS417_00605at 122.563 kb on + strand, within PS417_00605at 122.564 kb on - strand, within PS417_00605at 122.564 kb on - strand, within PS417_00605at 122.567 kb on + strand, within PS417_00605at 122.567 kb on + strand, within PS417_00605at 122.601 kb on + strand, within PS417_00605at 122.602 kb on - strand, within PS417_00605

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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120,313 - PS417_00595 0.51 -0.4
120,382 - PS417_00595 0.54 -0.3
120,382 - PS417_00595 0.54 -0.0
120,388 + PS417_00595 0.55 -0.7
120,389 - PS417_00595 0.55 +0.5
120,453 + PS417_00595 0.58 -0.9
120,454 - PS417_00595 0.58 +0.6
120,475 + PS417_00595 0.59 +0.3
120,476 - PS417_00595 0.59 -0.1
120,566 - PS417_00595 0.64 -0.3
121,470 + PS417_00600 0.40 -0.3
121,471 - PS417_00600 0.40 -0.3
121,471 - PS417_00600 0.40 -1.4
121,471 - PS417_00600 0.40 -0.2
121,538 - PS417_00600 0.55 -0.1
121,538 - PS417_00600 0.55 -1.1
121,594 + +2.3
121,595 - PS417_00600 0.67 -0.6
121,643 + PS417_00600 0.78 -0.3
121,643 + PS417_00600 0.78 +0.5
121,643 + PS417_00600 0.78 +2.0
121,643 + PS417_00600 0.78 -0.9
121,643 + PS417_00600 0.78 +0.3
121,644 - PS417_00600 0.78 -2.0
121,644 - PS417_00600 0.78 -0.4
121,644 - PS417_00600 0.78 -0.3
121,691 + PS417_00600 0.88 +0.3
121,723 + +1.6
121,744 + +1.3
121,744 + -0.6
121,745 - -0.6
121,788 + -0.5
121,967 + -0.5
121,968 - -0.2
122,038 - +0.1
122,281 + PS417_00605 0.15 +0.9
122,364 + PS417_00605 0.18 -0.3
122,364 + PS417_00605 0.18 +1.0
122,364 + PS417_00605 0.18 -0.2
122,365 - PS417_00605 0.18 -1.1
122,365 - PS417_00605 0.18 +0.6
122,397 - PS417_00605 0.19 +1.0
122,404 - PS417_00605 0.19 -0.6
122,404 - PS417_00605 0.19 -0.4
122,404 - PS417_00605 0.19 -0.3
122,486 + PS417_00605 0.21 -0.4
122,486 + PS417_00605 0.21 -0.7
122,487 - PS417_00605 0.21 +0.4
122,540 + PS417_00605 0.23 -1.6
122,540 + PS417_00605 0.23 +0.0
122,541 - PS417_00605 0.23 -0.2
122,541 - PS417_00605 0.23 +0.4
122,541 - PS417_00605 0.23 -1.2
122,541 - PS417_00605 0.23 -0.3
122,541 - PS417_00605 0.23 +1.0
122,541 - PS417_00605 0.23 +1.5
122,563 + PS417_00605 0.24 -0.3
122,563 + PS417_00605 0.24 -0.4
122,564 - PS417_00605 0.24 +0.4
122,564 - PS417_00605 0.24 -0.1
122,567 + PS417_00605 0.24 -0.2
122,567 + PS417_00605 0.24 +0.1
122,601 + PS417_00605 0.25 -0.4
122,602 - PS417_00605 0.25 -1.8

Or see this region's nucleotide sequence