Strain Fitness in Pseudomonas putida KT2440 around PP_0569

Experiment: Temperature shift 10_to_30; with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0567 and PP_0568 are separated by 166 nucleotidesPP_0568 and PP_0569 are separated by 126 nucleotidesPP_0569 and PP_0570 are separated by 180 nucleotides PP_0567: PP_0567 - Biosynthetic arginine decarboxylase, at 658,955 to 660,868 _0567 PP_0568: PP_0568 - conserved protein of unknown function, at 661,035 to 661,490 _0568 PP_0569: PP_0569 - MATE efflux family protein, at 661,617 to 662,954 _0569 PP_0570: PP_0570 - lipoprotein of unknown function, at 663,135 to 668,036 _0570 Position (kb) 661 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 660.657 kb on - strand, within PP_0567at 660.728 kb on + strandat 660.728 kb on + strandat 660.728 kb on + strandat 660.815 kb on + strandat 660.815 kb on + strandat 660.816 kb on - strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.932 kb on - strandat 660.966 kb on + strandat 660.970 kb on + strandat 661.003 kb on - strandat 661.034 kb on + strandat 661.060 kb on + strandat 661.096 kb on - strand, within PP_0568at 661.247 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.411 kb on - strand, within PP_0568at 661.461 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.834 kb on + strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 662.092 kb on + strand, within PP_0569at 662.092 kb on + strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.172 kb on - strand, within PP_0569at 662.204 kb on + strand, within PP_0569at 662.291 kb on - strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.407 kb on - strand, within PP_0569at 662.407 kb on - strand, within PP_0569at 662.500 kb on + strand, within PP_0569at 663.012 kb on + strandat 663.012 kb on + strandat 663.012 kb on + strandat 663.032 kb on - strandat 663.089 kb on + strandat 663.089 kb on + strandat 663.090 kb on - strandat 663.090 kb on - strandat 663.090 kb on - strandat 663.091 kb on + strandat 663.091 kb on + strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.092 kb on - strandat 663.108 kb on + strandat 663.129 kb on + strandat 663.129 kb on + strandat 663.130 kb on - strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.230 kb on + strandat 663.231 kb on - strandat 663.775 kb on - strand, within PP_0570at 663.775 kb on - strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.777 kb on + strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.778 kb on - strand, within PP_0570at 663.780 kb on + strand, within PP_0570at 663.780 kb on + strand, within PP_0570at 663.915 kb on + strand, within PP_0570at 663.945 kb on + strand, within PP_0570at 663.945 kb on + strand, within PP_0570at 663.946 kb on - strand, within PP_0570

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Per-strain Table

Position Strand Gene LocusTag Fraction Temperature shift 10_to_30; with MOPS
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660,657 - PP_0567 0.89 -1.2
660,728 + +0.8
660,728 + -0.4
660,728 + -1.3
660,815 + +0.5
660,815 + +1.1
660,816 - +1.3
660,854 + +0.1
660,854 + +0.8
660,854 + +1.3
660,855 - +0.2
660,855 - -0.1
660,855 - +0.8
660,932 - -1.3
660,966 + -2.7
660,970 + -0.6
661,003 - -2.3
661,034 + -0.2
661,060 + -0.5
661,096 - PP_0568 0.13 +0.9
661,247 + PP_0568 0.46 +0.1
661,317 + PP_0568 0.62 -0.4
661,317 + PP_0568 0.62 -0.0
661,318 - PP_0568 0.62 -1.5
661,318 - PP_0568 0.62 -0.6
661,343 + PP_0568 0.68 -0.6
661,343 + PP_0568 0.68 +0.6
661,343 + PP_0568 0.68 -0.1
661,343 + PP_0568 0.68 +0.3
661,344 - PP_0568 0.68 +0.3
661,344 - PP_0568 0.68 -0.3
661,410 + PP_0568 0.82 +0.9
661,410 + PP_0568 0.82 +0.3
661,411 - PP_0568 0.82 -0.9
661,461 + +0.4
661,480 + -0.7
661,480 + +0.4
661,480 + -1.3
661,480 + +1.8
661,481 - +2.5
661,481 - +1.7
661,481 - +0.4
661,481 - -1.1
661,481 - +1.5
661,834 + PP_0569 0.16 -0.0
661,886 - PP_0569 0.20 -0.6
661,886 - PP_0569 0.20 -1.1
661,886 - PP_0569 0.20 -0.6
662,092 + PP_0569 0.36 -1.5
662,092 + PP_0569 0.36 -0.6
662,093 - PP_0569 0.36 +1.3
662,093 - PP_0569 0.36 -0.8
662,093 - PP_0569 0.36 -2.5
662,172 - PP_0569 0.41 -1.6
662,204 + PP_0569 0.44 +1.2
662,291 - PP_0569 0.50 -2.0
662,406 + PP_0569 0.59 -0.1
662,406 + PP_0569 0.59 -0.2
662,406 + PP_0569 0.59 -0.4
662,407 - PP_0569 0.59 -0.9
662,407 - PP_0569 0.59 -0.6
662,500 + PP_0569 0.66 +0.8
663,012 + -0.2
663,012 + -0.9
663,012 + -3.1
663,032 - -0.2
663,089 + -0.1
663,089 + +0.1
663,090 - +0.3
663,090 - -0.9
663,090 - +0.2
663,091 + -0.7
663,091 + +1.4
663,092 - +0.4
663,092 - -0.8
663,092 - -1.1
663,092 - +0.2
663,092 - +0.4
663,108 + +0.0
663,129 + -1.3
663,129 + -0.9
663,130 - +0.2
663,230 + +0.2
663,230 + +0.1
663,230 + -0.2
663,230 + +0.1
663,231 - -2.2
663,775 - PP_0570 0.13 -1.0
663,775 - PP_0570 0.13 -0.1
663,777 + PP_0570 0.13 -0.3
663,777 + PP_0570 0.13 -3.2
663,777 + PP_0570 0.13 -2.1
663,777 + PP_0570 0.13 -0.0
663,778 - PP_0570 0.13 -0.5
663,778 - PP_0570 0.13 +0.0
663,778 - PP_0570 0.13 -0.5
663,778 - PP_0570 0.13 +0.0
663,780 + PP_0570 0.13 +0.2
663,780 + PP_0570 0.13 -2.2
663,915 + PP_0570 0.16 -0.6
663,945 + PP_0570 0.17 -0.9
663,945 + PP_0570 0.17 +0.1
663,946 - PP_0570 0.17 -1.3

Or see this region's nucleotide sequence