Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02510 and PS417_02515 are separated by 54 nucleotides PS417_02515 and PS417_02520 are separated by 139 nucleotides
PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676
_02510
PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020
_02515
PS417_02520: PS417_02520 - chemotaxis protein, at 576,160 to 578,094
_02520
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 573.993 kb on + strand, within PS417_02510 at 574.057 kb on + strand, within PS417_02510 at 574.057 kb on + strand, within PS417_02510 at 574.278 kb on + strand, within PS417_02510 at 574.657 kb on + strand at 576.022 kb on - strand at 576.022 kb on - strand at 576.034 kb on + strand at 576.182 kb on + strand at 576.183 kb on - strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.218 kb on + strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.219 kb on - strand at 576.222 kb on + strand at 576.605 kb on + strand, within PS417_02520 at 576.605 kb on + strand, within PS417_02520 at 576.606 kb on - strand, within PS417_02520 at 576.610 kb on + strand, within PS417_02520 at 576.611 kb on - strand, within PS417_02520
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 573,993 + PS417_02510 0.42 -6.4 574,057 + PS417_02510 0.48 -1.5 574,057 + PS417_02510 0.48 -5.2 574,278 + PS417_02510 0.66 -2.7 574,657 + +0.3 576,022 - -1.2 576,022 - +0.2 576,034 + +1.2 576,182 + -0.7 576,183 - +1.1 576,218 + +0.7 576,218 + +2.0 576,218 + -0.3 576,219 - +1.8 576,219 - -0.2 576,219 - -0.9 576,222 + -0.6 576,605 + PS417_02520 0.23 -0.2 576,605 + PS417_02520 0.23 -0.3 576,606 - PS417_02520 0.23 -2.3 576,610 + PS417_02520 0.23 -0.5 576,611 - PS417_02520 0.23 -0.6
Or see this region's nucleotide sequence