Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20850 and PS417_20855 are separated by 20 nucleotides PS417_20855 and PS417_20860 are separated by 453 nucleotides PS417_20860 and PS417_20865 are separated by 176 nucleotides
PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970
_20850
PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422
_20855
PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039
_20860
PS417_20865: PS417_20865 - NAD-dependent DNA ligase LigA, at 4,531,216 to 4,533,573
_20865
Position (kb)
4529
4530
4531
4532 Strain fitness (log2 ratio)
-2
-1
0
1 at 4528.952 kb on + strand at 4528.971 kb on - strand at 4529.047 kb on + strand, within PS417_20855 at 4529.048 kb on - strand, within PS417_20855 at 4529.711 kb on - strand at 4529.773 kb on + strand at 4529.774 kb on - strand at 4529.774 kb on - strand at 4529.784 kb on - strand at 4529.932 kb on + strand at 4529.976 kb on + strand at 4530.087 kb on + strand, within PS417_20860 at 4530.283 kb on - strand, within PS417_20860 at 4530.306 kb on + strand, within PS417_20860 at 4530.306 kb on + strand, within PS417_20860 at 4530.382 kb on - strand, within PS417_20860 at 4530.385 kb on - strand, within PS417_20860
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,528,952 + -0.5 4,528,971 - -0.5 4,529,047 + PS417_20855 0.13 -2.1 4,529,048 - PS417_20855 0.13 -1.4 4,529,711 - +0.2 4,529,773 + +0.9 4,529,774 - -0.8 4,529,774 - -0.2 4,529,784 - +0.3 4,529,932 + +0.3 4,529,976 + -0.8 4,530,087 + PS417_20860 0.18 -0.1 4,530,283 - PS417_20860 0.35 +0.1 4,530,306 + PS417_20860 0.37 -0.0 4,530,306 + PS417_20860 0.37 +0.3 4,530,382 - PS417_20860 0.43 -0.1 4,530,385 - PS417_20860 0.44 +0.5
Or see this region's nucleotide sequence