Strain Fitness in Pseudomonas simiae WCS417 around PS417_18275

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18270 and PS417_18275 are separated by 136 nucleotidesPS417_18275 and PS417_18280 are separated by 85 nucleotides PS417_18270: PS417_18270 - alcohol dehydrogenase, at 3,980,679 to 3,981,719 _18270 PS417_18275: PS417_18275 - VacJ family lipoprotein, at 3,981,856 to 3,982,557 _18275 PS417_18280: PS417_18280 - transporter, at 3,982,643 to 3,984,034 _18280 Position (kb) 3981 3982 3983Strain fitness (log2 ratio) -2 -1 0 1at 3980.993 kb on + strand, within PS417_18270at 3980.994 kb on - strand, within PS417_18270at 3980.994 kb on - strand, within PS417_18270at 3981.049 kb on + strand, within PS417_18270at 3981.050 kb on - strand, within PS417_18270at 3981.540 kb on + strand, within PS417_18270at 3981.541 kb on - strand, within PS417_18270at 3981.718 kb on - strandat 3981.772 kb on - strandat 3981.871 kb on + strandat 3981.871 kb on + strandat 3981.872 kb on - strandat 3981.911 kb on + strandat 3981.925 kb on - strandat 3981.932 kb on + strand, within PS417_18275at 3982.009 kb on - strand, within PS417_18275at 3982.011 kb on + strand, within PS417_18275at 3982.119 kb on - strand, within PS417_18275at 3982.332 kb on + strand, within PS417_18275at 3982.333 kb on - strand, within PS417_18275at 3982.333 kb on - strand, within PS417_18275at 3982.400 kb on + strand, within PS417_18275at 3982.400 kb on + strand, within PS417_18275at 3982.400 kb on + strand, within PS417_18275at 3982.400 kb on + strand, within PS417_18275at 3982.401 kb on - strand, within PS417_18275at 3982.401 kb on - strand, within PS417_18275at 3982.404 kb on + strand, within PS417_18275at 3982.411 kb on + strand, within PS417_18275at 3982.440 kb on + strand, within PS417_18275at 3982.671 kb on + strandat 3982.788 kb on + strand, within PS417_18280at 3982.852 kb on + strand, within PS417_18280at 3982.927 kb on - strand, within PS417_18280at 3983.158 kb on + strand, within PS417_18280at 3983.159 kb on - strand, within PS417_18280at 3983.342 kb on + strand, within PS417_18280at 3983.343 kb on - strand, within PS417_18280at 3983.416 kb on - strand, within PS417_18280at 3983.437 kb on - strand, within PS417_18280

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,980,993 + PS417_18270 0.30 -0.0
3,980,994 - PS417_18270 0.30 +0.5
3,980,994 - PS417_18270 0.30 -0.5
3,981,049 + PS417_18270 0.36 -0.3
3,981,050 - PS417_18270 0.36 -1.0
3,981,540 + PS417_18270 0.83 -0.6
3,981,541 - PS417_18270 0.83 -0.5
3,981,718 - +0.1
3,981,772 - -0.1
3,981,871 + -2.3
3,981,871 + +1.0
3,981,872 - +0.0
3,981,911 + +0.4
3,981,925 - +0.4
3,981,932 + PS417_18275 0.11 -0.4
3,982,009 - PS417_18275 0.22 -0.0
3,982,011 + PS417_18275 0.22 -1.8
3,982,119 - PS417_18275 0.37 -0.6
3,982,332 + PS417_18275 0.68 -1.5
3,982,333 - PS417_18275 0.68 -1.9
3,982,333 - PS417_18275 0.68 +1.3
3,982,400 + PS417_18275 0.77 -0.5
3,982,400 + PS417_18275 0.77 +1.1
3,982,400 + PS417_18275 0.77 -0.3
3,982,400 + PS417_18275 0.77 -0.6
3,982,401 - PS417_18275 0.78 -0.0
3,982,401 - PS417_18275 0.78 -0.8
3,982,404 + PS417_18275 0.78 -2.0
3,982,411 + PS417_18275 0.79 +0.5
3,982,440 + PS417_18275 0.83 -0.0
3,982,671 + -1.3
3,982,788 + PS417_18280 0.10 -0.1
3,982,852 + PS417_18280 0.15 -0.1
3,982,927 - PS417_18280 0.20 -0.2
3,983,158 + PS417_18280 0.37 +0.2
3,983,159 - PS417_18280 0.37 +0.3
3,983,342 + PS417_18280 0.50 +1.0
3,983,343 - PS417_18280 0.50 +1.4
3,983,416 - PS417_18280 0.56 +0.9
3,983,437 - PS417_18280 0.57 -1.6

Or see this region's nucleotide sequence